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Updated: Jun 27, 2025

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
Published on: June 24, 2013
Imaging intracellular components in situ using super-resolution cryo-correlative light and electron microscopy
Mart G F Last1, Lenard M Voortman1, Thomas H Sharp2
1Department of Cell and Chemical Biology, Leiden University Medical Centre, Leiden, The Netherlands.
Super-resolution cryo-correlative light and electron microscopy (SRcryoCLEM) combines cryo-single-molecule localization microscopy (cryoSMLM) and cryo-electron tomography (cryoET) for targeted in situ imaging. This workflow facilitates the study of biomolecules within their cellular environment.
Area of Science:
- Structural Biology
- Cell Biology
- Microscopy
Background:
- Super-resolution cryo-correlative light and electron microscopy (SRcryoCLEM) integrates cryo-single-molecule localization microscopy (cryoSMLM) and cryo-electron tomography (cryoET).
- This technique allows for precise localization and high-resolution imaging of biomolecules in their native cellular context.
- Challenges in SRcryoCLEM include specialized equipment and expertise requirements.
Purpose of the Study:
- To present a streamlined workflow for SRcryoCLEM.
- To demonstrate the integration of cryoSMLM into established cryoET protocols.
- To facilitate the adoption of SRcryoCLEM in structural biology research.
Main Methods:
- Implementation of a cryoSMLM workflow for precise biomolecule localization.
- Targeted cryo-electron tomography (cryoET) acquisition guided by cryoSMLM data.
- Correlation of cryoSMLM and cryoET datasets utilizing the scNodes software package.
Main Results:
- Successful execution of all SRcryoCLEM experiment stages using Vimentin as a target.
- Demonstration of cryoSMLM integration into a standard cryoET workflow.
- Validation of scNodes software for correlating cryoSMLM and cryoET data.
Conclusions:
- SRcryoCLEM is an accessible technique for in situ imaging of specific intracellular components.
- The presented workflow simplifies the process, making SRcryoCLEM more attainable.
- This method enhances the ability to study biomolecular structures within their cellular environment.
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