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Potential drug targets for tumors identified through Mendelian randomization analysis
Na Song1,2, Pingyu Shi2, Kai Cui2
1Department of Pathology, Xinxiang Key Laboratory of Precision Medicine, The First Affiliated Hospital of Xinxiang Medical University, Jiankang Road No.88, Xinxiang, 453100, China.
Abstract:
According to the latest cancer research data, there are a significant number of new cancer cases and a substantial mortality rate each year. Although a substantial number of clinical patients are treated with existing cancer drugs each year, the efficacy is unsatisfactory. The incidence is still high and the effectiveness of most cancer drugs remains unsatisfactory. Therefore, we evaluated the human proteins for their causal relationship to for cancer risk and therefore also their potential as drug targets. We used summary tumors data from the FinnGen and cis protein quantitative trait loci (cis-pQTL) data from a genome-wide association study, and employed Mendelian randomization (MR) to explore the association between potential drug targets and nine tumors, including breast, colorectal, lung, liver, bladder, prostate, kidney, head and neck, pancreatic caners. Furthermore, we conducted MR analysis on external cohort. Moreover, Bidirectional MR, Steiger filtering, and colocalization were employed to validate the main results. The DrugBank database was used to discover potential drugs of tumors. Under the threshold of False discovery rate (FDR) < 0.05, results showed that S100A16 was protective protein and S100A14 was risk protein for human epidermal growth factor receptor 2-positive (HER-positive) breast cancer, phosphodiesterase 5A (PDE5A) was risk protein for colorectal cancer, and melanoma inhibitory activity (MIA) was protective protein for non-small cell lung carcinoma (NSCLC). And there was no reverse causal association between them. Colocalization analysis showed that S100A14 (PP.H4.abf = 0.920) and S100A16 (PP.H4.abf = 0.932) shared causal variation with HER-positive breast cancer, and PDE5A (PP.H4.abf = 0.857) shared causal variation with colorectal cancer (CRC). The MR results of all pQTL of PDE5A and MIA were consistent with main results. In addition, the MR results of MIA and external outcome cohort were consistent with main results. In this study, genetic predictions indicate that circulating S100 calcium binding protein A14 (S100A14) and S100 calcium binding protein A16 (S100A16) are associated with increase and decrease in the risk of HER-positive breast cancer, respectively. Circulating PDE5A is associated with increased risk of CRC, while circulating MIA is associated with decreased risk of NSCLC. These findings suggest that four proteins may serve as biomarkers for cancer prevention and as potential drug targets that could be expected for approval.
Insights
This study identifies four proteins—S100A14, S100A16, PDE5A, and MIA—as potential drug targets for cancer. These proteins show associations with the risk of HER-positive breast, colorectal, and non-small cell lung cancers, offering new avenues for cancer prevention and treatment.
Area of Science:
- Genetics
- Oncology
- Pharmacology
Background:
- Cancer incidence and mortality remain high, with existing treatments showing unsatisfactory efficacy.
- There is a critical need to identify novel drug targets and biomarkers for effective cancer prevention and therapy.
- Human proteins are evaluated for their causal relationship to cancer risk and potential as therapeutic targets.
Purpose of the Study:
- To investigate the causal relationship between human proteins and the risk of nine major cancer types using genetic data.
- To identify potential protein biomarkers and drug targets for breast, colorectal, lung, liver, bladder, prostate, kidney, head and neck, and pancreatic cancers.
- To validate findings using Mendelian randomization, external cohorts, and drug databases.
Main Methods:
- Mendelian randomization (MR) analysis utilizing summary statistics from FinnGen and cis-protein quantitative trait loci (cis-pQTL) data.
- Exploration of associations between potential drug targets and nine cancer types.
- Validation through bidirectional MR, Steiger filtering, colocalization analysis, and the DrugBank database.
Main Results:
- S100A16 identified as protective and S100A14 as a risk protein for HER-positive breast cancer (FDR < 0.05).
- Phosphodiesterase 5A (PDE5A) identified as a risk protein for colorectal cancer (CRC).
- Melanoma inhibitory activity (MIA) identified as a protective protein for non-small cell lung carcinoma (NSCLC).
- Colocalization analysis confirmed shared causal variation for S100A14, S100A16 with HER-positive breast cancer, and PDE5A with CRC.
Conclusions:
- Circulating S100A14 and S100A16 are associated with increased and decreased risk of HER-positive breast cancer, respectively.
- Circulating PDE5A is linked to increased CRC risk, while MIA is linked to decreased NSCLC risk.
- These four proteins (S100A14, S100A16, PDE5A, MIA) represent promising biomarkers for cancer prevention and potential drug targets for therapeutic development.
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