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Updated: Jun 25, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Transcription-coupled DNA repair protects genome stability upon oxidative stress-derived DNA strand breaks
Haibo Yang1, Li Lan2
1Department of Urology, Brigham and Women's Hospital & Harvard Medical School, Boston, MA, USA.
Abstract:
Elevated oxidative stress, which threatens genome stability, has been detected in almost all types of cancers. Cells employ various DNA repair pathways to cope with DNA damage induced by oxidative stress. Recently, a lot of studies have provided insights into DNA damage response upon oxidative stress, specifically in the context of transcriptionally active genomes. Here, we summarize recent studies to help understand how the transcription is regulated upon DNA double strand breaks (DSB) and how DNA repair pathways are selectively activated at the damage sites coupling with transcription. The role of RNA molecules, especially R-loops and RNA modifications during the DNA repair process, is critical for protecting genome stability. This review provides an update on how cells protect transcribed genome loci via transcription-coupled repair pathways.
Insights
Cells use DNA repair pathways to combat oxidative stress and protect genome stability. This review highlights how transcription regulation and RNA molecules are crucial for repairing DNA damage in active genes.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- Oxidative stress is prevalent in cancers, threatening genome stability.
- Cells possess DNA repair pathways to counteract oxidative DNA damage.
- Understanding DNA damage response in transcriptionally active genomes is crucial.
Purpose of the Study:
- To review how transcription is regulated following DNA double-strand breaks (DSB).
- To explore the selective activation of DNA repair pathways at damage sites.
- To elucidate the role of RNA molecules in genome protection during DNA repair.
Main Methods:
- Literature review of recent studies on DNA damage response.
- Analysis of transcription regulation mechanisms upon DNA damage.
- Investigation of DNA repair pathway activation coupled with transcription.
Main Results:
- Transcription regulation is altered upon DNA double-strand breaks.
- DNA repair pathways are selectively activated in coordination with transcription.
- RNA molecules, including R-loops and modified RNAs, play a vital role in DNA repair.
- Transcription-coupled repair pathways protect transcribed genomic loci.
Conclusions:
- Cells utilize transcription-coupled repair to maintain genome stability under oxidative stress.
- RNA molecules are critical mediators in the DNA repair process.
- Further research into these pathways can inform cancer therapy.
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