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Simulation of Automatically Annotated Visible and Multi-/Hyperspectral Images Using the Helios 3D Plant and Radiative
Tong Lei1, Jan Graefe2, Ismael K Mayanja3
1Department of Plant Sciences, University of California, Davis, CA, USA.
Plant Phenomics (Washington, D.C.)
|May 31, 2024
Summary
This study introduces a new radiative transfer modeling framework using Helios 3D software to simulate plant images. This approach reduces the need for labor-intensive data collection and annotation in plant trait analysis.
Area of Science:
- Plant science
- Remote sensing
- Computer graphics
Background:
- Supervised deep learning models for plant trait analysis require extensive annotated datasets.
- Manual data collection for these datasets is labor-intensive and time-consuming.
- Extracting complex plant traits from remote sensing data remains challenging.
Purpose of the Study:
- To develop a radiative transfer modeling framework for simulating plant images with accurate annotations.
- To reduce reliance on manually collected and annotated datasets for plant trait analysis.
- To enable unsupervised learning for plant trait extraction using simulated data.
Main Methods:
- Utilized the Helios 3D plant modeling software to create a radiative transfer modeling framework.
- Simulated various imaging modalities including RGB, multi-/hyperspectral, thermal, and depth cameras.
- Generated 3D plant and soil models with random variations and specified properties, explicitly modeling radiation transfer physics.
Main Results:
- The framework successfully generated high-quality, labeled synthetic plant images under various lighting conditions.
- Simulated images possess fully resolved reference labels for physical, chemical, and physiological plant traits.
- Demonstrated the framework's capability to support unsupervised learning by training models exclusively on simulated data.
Conclusions:
- The proposed Helios-based framework effectively generates synthetic, annotated plant images, significantly reducing the need for manual data annotation.
- This approach facilitates the application of deep learning models in plant trait analysis, particularly for unsupervised learning tasks.
- The framework provides a viable solution for overcoming data acquisition bottlenecks in plant remote and proximal sensing.

