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Updated: Jun 25, 2025

Stochastic Noise Application for the Assessment of Medial Vestibular Nucleus Neuron Sensitivity In Vitro
Published on: August 28, 2019
Augmented Thresholds for MONI
César Martínez-Guardiola1, Nathaniel K Brown2, Fernando Silva-Coira1
1Universidade da Coruña, CITIC, A Coruña, Spain.
Abstract:
MONI (Rossi et al., 2022) can store a pangenomic dataset T in small space and later, given a pattern P, quickly find the maximal exact matches (MEMs) of P with respect to T. In this paper we consider its one-pass version (Boucher et al., 2021), whose query times are dominated in our experiments by longest common extension (LCE) queries. We show how a small modification lets us avoid most of these queries which significantly speeds up MONI in practice while only slightly increasing its size.
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