Jove
Visualize
Contact Us

Related Concept Videos

Friedman Two-way Analysis of Variance by Ranks01:21

Friedman Two-way Analysis of Variance by Ranks

185
Friedman's Two-Way Analysis of Variance by Ranks is a nonparametric test designed to identify differences across multiple test attempts when traditional assumptions of normality and equal variances do not apply. Unlike conventional ANOVA, which requires normally distributed data with equal variances, Friedman's test is ideal for ordinal or non-normally distributed data, making it particularly useful for analyzing dependent samples, such as matched subjects over time or repeated measures...
185
Wilcoxon Signed-Ranks Test for Matched Pairs01:09

Wilcoxon Signed-Ranks Test for Matched Pairs

119
The Wilcoxon signed-rank test for matched pairs evaluates the null hypothesis by combining the ranks of differences with their signs. It essentially tests whether the median of the differences in a population of matched pairs is zero. Since the test incorporates more information than the sign test, it generally yields more trustable conclusions. This test also does not require the data to follow a normal distribution, but two conditions must be met for it to be applicable: (1) the data must...
119
Wald-Wolfowitz Runs Test I01:17

Wald-Wolfowitz Runs Test I

640
The Wald-Wolfowitz test, also known as the runs test, is a nonparametric statistical test used to assess the randomness of a sequence of two different types of elements (e.g., positive/negative values, successes/failures). It examines whether the order of the elements in a sequence is random or if there is a pattern or trend present. This nonparametric test applies to any ordered data despite the population and sample data distribution, even if a higher sample size is available.
The test works...
640
Wilcoxon Signed-Ranks Test for Median of Single Population01:14

Wilcoxon Signed-Ranks Test for Median of Single Population

120
The Wilcoxon signed-rank test for the median of a single population is a nonparametric test used to evaluate whether the median of a population differs from a specified value. Unlike parametric tests, it does not require data to follow a normal distribution, making it suitable for non-normal or small samples. The test begins by calculating the difference (d) between each observation and the hypothesized median. The absolute values of these differences are ranked in ascending order, with ties...
120
Fisher's Exact Test01:08

Fisher's Exact Test

465
Fisher's exact test is a statistical significance test widely used to analyze 2x2 contingency tables, particularly in situations where sample sizes are small. Unlike the chi-squared test, which approximates P-values and assumes minimum expected frequencies of at least five in each cell, Fisher's exact test calculates the exact probability (P-value) of observing the data or more extreme results under the null hypothesis. This feature makes it especially valuable when the assumptions of...
465
Statistical Analysis System (SAS)01:14

Statistical Analysis System (SAS)

156
SAS, short for Statistical Analysis System, is a powerful data analysis, management, and visualization tool. Developed by the SAS Institute in the early 1970s, SAS has evolved into a comprehensive software suite used across various industries for statistical analysis, business intelligence, and predictive modeling.
Applications: SAS finds applications in numerous fields, including healthcare for clinical trial analysis, finance for risk assessment, marketing for customer data analysis, and...
156

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Movi 2: Fast and Space-Efficient Queries on Pangenomes.

Bioinformatics (Oxford, England)·2026
Same author

Pattern matching with Elastic-Degenerate strings and Elastic-Founder graphs.

Algorithms for molecular biology : AMB·2026
Same author

Clinical Significance of Renal Tissue in Neonatal Sacrococcygeal Teratoma: A Case Report With Review of Literature.

Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society·2026
Same author

Faster run-length compressed suffix arrays.

Oasics : openaccess series in informatics·2026
Same author

Overdiagnosis of necrotizing fasciitis: clinical-radiological suspicion <i>versus</i> intraoperative findings in 62 fasciotomy patients.

Infectious diseases (London, England)·2026
Same author

Response to: "best practices when benchmarking CATCH for the design of genome enrichment probes".

Bioinformatics (Oxford, England)·2026
Same journal

Faster Maximal Exact Matches with Lazy LCP Evaluation.

Proceedings. Data Compression Conference·2024
Same journal

Recursive Prefix-Free Parsing for Building Big BWTs.

Proceedings. Data Compression Conference·2024
Same journal

Augmented Thresholds for MONI.

Proceedings. Data Compression Conference·2024
Same journal

CSTs for Terabyte-Sized Data.

Proceedings. Data Compression Conference·2024
Same journal

PHONI: Streamed Matching Statistics with Multi-Genome References.

Proceedings. Data Compression Conference·2021
Same journal

Denoising of Quality Scores for Boosted Inference and Reduced Storage.

Proceedings. Data Compression Conference·2017
See all related articles
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Video

Updated: Jun 24, 2025

Inverse Probability of Treatment Weighting Propensity Score using the Military Health System Data Repository and National Death Index
06:55

Inverse Probability of Treatment Weighting Propensity Score using the Military Health System Data Repository and National Death Index

Published on: January 8, 2020

14.5K

Computing matching statistics on Wheeler DFAs.

Alessio Conte1, Nicola Cotumaccio2,3, Travis Gagie3

  • 1University of Pisa, Italy.

Proceedings. Data Compression Conference
|June 4, 2024
PubMed
Summary
This summary is machine-generated.

This study generalizes matching statistics algorithms for approximate string matching from strings to Wheeler automata. It introduces a longest common prefix (LCP) array for automata, extending compressed suffix tree functionalities to labeled graphs.

More Related Videos

Computerized Adaptive Testing System of Functional Assessment of Stroke
05:21

Computerized Adaptive Testing System of Functional Assessment of Stroke

Published on: January 7, 2019

5.8K
Author Spotlight: Validation of SICOLE-R for Assessing Cognitive and Reading Skills in Spanish-Speaking Children and Its Role in Personalized Education
09:00

Author Spotlight: Validation of SICOLE-R for Assessing Cognitive and Reading Skills in Spanish-Speaking Children and Its Role in Personalized Education

Published on: August 16, 2024

752

Related Experiment Videos

Last Updated: Jun 24, 2025

Inverse Probability of Treatment Weighting Propensity Score using the Military Health System Data Repository and National Death Index
06:55

Inverse Probability of Treatment Weighting Propensity Score using the Military Health System Data Repository and National Death Index

Published on: January 8, 2020

14.5K
Computerized Adaptive Testing System of Functional Assessment of Stroke
05:21

Computerized Adaptive Testing System of Functional Assessment of Stroke

Published on: January 7, 2019

5.8K
Author Spotlight: Validation of SICOLE-R for Assessing Cognitive and Reading Skills in Spanish-Speaking Children and Its Role in Personalized Education
09:00

Author Spotlight: Validation of SICOLE-R for Assessing Cognitive and Reading Skills in Spanish-Speaking Children and Its Role in Personalized Education

Published on: August 16, 2024

752

Area of Science:

  • Computer Science
  • Bioinformatics Algorithms
  • Graph Theory

Background:

  • Approximate string matching is crucial in bioinformatics, often solved using matching statistics.
  • Existing efficient algorithms for matching statistics leverage compressed suffix trees and the longest common prefix (LCP) array.
  • These methods are primarily designed for linear string data structures.

Purpose of the Study:

  • To generalize efficient matching statistics algorithms beyond linear strings.
  • To extend the applicability of compressed suffix tree concepts to more complex data structures.
  • To establish foundational methods for analyzing Wheeler automata in the context of string matching.

Main Methods:

  • Generalization of the Ohlebusch et al. (2010) matching statistics algorithm.
  • Adaptation of compressed suffix tree components, specifically the LCP array concept.
  • Development of a novel LCP array definition for Wheeler deterministic finite automata.

Main Results:

  • Successful generalization of matching statistics computation to Wheeler automata.
  • Introduction and formalization of the LCP array concept for Wheeler automata.
  • Demonstration of a pathway to extend suffix tree functionalities to labeled graphs.

Conclusions:

  • The proposed generalization significantly broadens the scope of matching statistics.
  • The LCP array for Wheeler automata is a key innovation for graph-based string processing.
  • This work provides a foundation for advanced bioinformatics algorithms on labeled graphs.