Related Experiment Video
Updated: Jun 25, 2025

A Practical Guide to Phylogenetics for Nonexperts
Published on: February 5, 2014
A Guide to Phylogenomic Inference
José S L Patané1, Joaquim Martins2, João Carlos Setubal3
1Laboratório de Genética e Cardiologia Molecular, Instituto do Coração/Heart Institute Hospital das Clínicas - Faculdade de Medicina da Universidade de São Paulo São Paulo, São Paulo, SP, Brazil.
None:
Phylogenomics aims at reconstructing the evolutionary histories of organisms taking into account whole genomes or large fractions of genomes. Phylogenomics has significant applications in fields such as evolutionary biology, systematics, comparative genomics, and conservation genetics, providing valuable insights into the origins and relationships of species and contributing to our understanding of biological diversity and evolution. This chapter surveys phylogenetic concepts and methods aimed at both gene tree and species tree reconstruction while also addressing common pitfalls, providing references to relevant computer programs. A practical phylogenomic analysis example including bacterial genomes is presented at the end of the chapter.
Related Concept Videos
Evolutionary Relationships through Genome Comparisons
Phylogeny
Phylogenetic Trees
Gene Evolution - Fast or Slow?
In contrast, regions which code...
The Tree of Life - Bacteria, Archaea, Eukaryotes
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes

