Illumina short read-based shotgun metagenomic data sets of simulated bacterial communities derived from fresh spinach and surface water
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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples
Published on: December 22, 2014
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Zhao Chen1, Jianghong Meng1,2
1Joint Institute for Food Safety and Applied Nutrition, and Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA.
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|June 11, 2024
Abstract:
Paired-end short reads of Illumina HiSeq, MiSeq, and NovaSeq of simulated bacterial communities from fresh spinach and surface water were generated in silico at various sequencing depths. Multidrug-resistant Salmonella enterica serotype Indiana was included in the spinach community, while the water community contained multidrug-resistant Pseudomonas aeruginosa.
Keywords:
Illumina sequencingPseudomonas aeruginosaSalmonella entericamultidrug resistancesequencing depthshort readshotgun metagenomicssimulated community
