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Updated: Aug 15, 2026

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Complete genome sequence of a novel botourmiavirus infecting the fungus Phomopsis asparagi
Jingyi Zhou1,2, Shuang Liu1,2, Yun Xu3
1School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Hainan Yazhou Bay Seed Laboratory, Sanya, 572025, China.
Abstract:
Here, we report a novel ourmia-like mycovirus, named "Phomopsis asparagi magoulivirus 1" (PaMV1), derived from the phytopathogenic fungus Phomopsis asparagi. The genome of PaMV1 consists of a positive-sense single-stranded RNA (+ ssRNA) that is 2,639 nucleotides in length, with a GC content of 57.13%. It contains a single open reading frame (ORF) encoding a putative RNA-dependent RNA polymerase (RdRp) consisting of 686 amino acids with a molecular mass of 78.57 kDa. Phylogenetic analysis based on RdRp sequences revealed that PaMV1 grouped together with Diaporthe gulyae magoulivirus 1 (DgMV1) in a distinct clade. Sequence comparisons and phylogenetic analysis suggest that PaMV1 is a novel member of the genus Magoulivirus, family Botourmiaviridae.
Insights
A new mycovirus, Phomopsis asparagi magoulivirus 1 (PaMV1), was discovered in a plant fungus. Phylogenetic analysis confirms PaMV1 as a novel species within the Magoulivirus genus.
Area of Science:
- Virology
- Mycology
- Plant Pathology
Background:
- Phytopathogenic fungi can harbor mycoviruses that influence host biology.
- The diversity of mycoviruses, particularly within the family Botourmiaviridae, is still being explored.
Purpose of the Study:
- To characterize a novel mycovirus isolated from Phomopsis asparagi.
- To determine the phylogenetic placement of the newly identified mycovirus.
Main Methods:
- Genome sequencing of the mycovirus.
- Bioinformatic analysis of the viral genome, including open reading frame identification.
- Phylogenetic analysis based on RNA-dependent RNA polymerase (RdRp) sequences.
Main Results:
- Discovery and characterization of Phomopsis asparagi magoulivirus 1 (PaMV1).
- PaMV1 possesses a positive-sense single-stranded RNA genome (2,639 nucleotides) encoding a putative RdRp.
- Phylogenetic analysis places PaMV1 within the genus Magoulivirus, distinct from other known viruses.
Conclusions:
- PaMV1 represents a novel mycovirus, expanding the known diversity within the genus Magoulivirus.
- The findings contribute to understanding the virosphere of phytopathogenic fungi.
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