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Updated: Jun 21, 2025

Using a Cyclic Ion Mobility Spectrometer for Tandem Ion Mobility Experiments
Published on: January 20, 2022
Accurate Collisional Cross Section Measurement by Multipass Cyclic Ion Mobility Spectrometry
Chaoshuang Xia1, Elias Mernie1, Joseph Zaia1
1Department of Biochemistry & Cell Biology, Center for Biomedical Mass Spectrometry, Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts 02118, United States.
This study introduces a novel calibration strategy for multipass cyclic ion mobility-mass spectrometry (cIMS), improving collision cross section (CCS) accuracy. The method enhances structural characterization by enabling precise analyte identification with high mobility resolution.
Area of Science:
- Analytical Chemistry
- Biophysical Chemistry
- Separation Science
Background:
- Ion mobility-mass spectrometry (IM-MS) is crucial for structural characterization, providing collision cross section (CCS) values for analyte identification.
- Drift tube ion mobility spectrometry (DT-IMS) offers direct CCS calculation but suffers from limited mobility resolution due to path length constraints.
- Cyclic IMS (cIMS) with traveling wave ion mobility (TWIM) offers higher resolution but faces calibration challenges, especially for multipass analyses.
Purpose of the Study:
- To develop a novel calibration strategy for multipass cIMS analyses to overcome limitations of existing methods.
- To address path length- and mobility-dependent variations in ion drift time, a key challenge in multipass calibration.
- To enable accurate and reproducible CCS measurements using the high mobility resolution of multipass cIMS.
Main Methods:
- Developed a novel calibration strategy specifically for multipass cIMS, targeting the root causes of drift time variations.
- Implemented an algorithm for reconstructing arrival time distributions to handle peak splitting caused by wrap-around in cIMS.
- Applied the new method to characterize four isomeric trisaccharides, comparing results with single-pass and DT-IMS data.
Main Results:
- The novel multipass calibration strategy yielded CCS values with an average deviation of only 0.1% compared to single-pass analyses.
- Measured cIMS CCS values showed excellent agreement with reported DT-IMS CCS values, with an average difference of 0.5%.
- The method successfully resolved subtle mobility characteristics of isomeric trisaccharides, achieving previously unattainable detail and accuracy.
Conclusions:
- The new calibration strategy and reconstruction algorithm significantly improve the accuracy and reproducibility of CCS measurements in multipass cIMS.
- This approach effectively eliminates the need for meticulous separation time selection, simplifying cIMS data acquisition and analysis.
- Researchers can now leverage the high mobility resolution of multipass cIMS without compromising CCS measurement accuracy, broadening its applicability.
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