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Virtual node graph neural network for full phonon prediction.

Ryotaro Okabe1,2, Abhijatmedhi Chotrattanapituk3,4, Artittaya Boonkird3,5

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We developed a virtual node graph neural network for predicting material properties, achieving high efficiency and accuracy in phonon spectra and band structure prediction. This enables rapid materials design for desired phonon characteristics.

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Area of Science:

  • Materials Science
  • Computational Chemistry
  • Machine Learning

Background:

  • Understanding material structure-property relationships is key for designing new materials.
  • Machine learning (ML) has advanced this field, but faces challenges in model generalizability and predicting properties with variable output dimensions.

Purpose of the Study:

  • To address challenges in ML-based material property prediction.
  • To introduce a novel virtual node graph neural network (VNGNN) for predicting phonon properties.
  • To enable efficient and accurate prediction of phonon spectra and band structures.

Main Methods:

  • Developed three virtual node approaches within a graph neural network framework.
  • Applied the VNGNN to predict Gamma-phonon (Γ-phonon) spectra and full phonon dispersion from atomic coordinates.
  • Compared the VNGNN approach against machine-learning interatomic potentials (MLIPs).

Main Results:

  • Achieved orders-of-magnitude higher efficiency than MLIPs with comparable or better accuracy.
  • Generated a database of Γ-phonon spectra for over 146,000 materials.
  • Successfully predicted phonon band structures for zeolites.

Conclusions:

  • The virtual node method offers a flexible and generic approach for ML-driven materials design.
  • Enables rapid, high-quality prediction of phonon band structures for designing materials with specific phonon properties.
  • Advances the application of graph neural networks in materials science for property prediction.