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Updated: Jun 20, 2025

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Overcoming cancer drug-resistance calls for novel strategies targeting abnormal alternative splicing
Ji Zhang1, Xinyu Xu1, Hongwei Deng1
1Department of Anesthesiology, The Affiliated Hospital, Southwest Medical University, Luzhou, Sichuan Province 646000, China; Anesthesiology and Critical Care Medicine Key Laboratory of Luzhou, The Affiliated Hospital, Southwest Medical University, Luzhou, Sichuan Province 646000, China.
Abstract:
Abnormal gene alternative splicing (AS) events are strongly associated with cancer progression. Here, we summarize AS events that contribute to the development of drug resistance and classify them into three categories: alternative cis-splicing (ACS), alternative trans-splicing (ATS), and alternative back-splicing (ABS). The regulatory mechanisms underlying AS processes through cis-acting regulatory elements and trans-acting factors are comprehensively described, and the distinct functions of spliced variants, including linear spliced variants derived from ACS, chimeric spliced variants arising from ATS, and circRNAs generated through ABS, are discussed. The identification of dysregulated spliced variants, which contribute to drug resistance and hinder effective cancer treatment, suggests that abnormal AS processes may together serve as a precise regulatory mechanism enabling drug-resistant cancer cell survival or, alternatively, represent an evolutionary pathway for cancer cells to adapt to changes in the external environment. Moreover, this review summarizes recent advancements in treatment approaches targeting AS-associated drug resistance, focusing on cis-acting regulatory elements, trans-acting factors, and specific spliced variants. Collectively, gaining an in-depth understanding of the mechanisms underlying aberrant alternative splicing events and developing strategies to target this process hold great promise for overcoming cancer drug resistance.
Insights
Abnormal gene alternative splicing (AS) events drive cancer drug resistance. Understanding and targeting these splicing alterations offers a promising strategy to overcome treatment challenges and improve patient outcomes.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- Abnormal gene alternative splicing (AS) is linked to cancer progression.
- AS events contribute to the development of drug resistance in cancer cells.
Purpose of the Study:
- To summarize AS events (alternative cis-splicing, alternative trans-splicing, alternative back-splicing) associated with drug resistance.
- To describe regulatory mechanisms and functions of spliced variants.
- To review treatment strategies targeting AS-associated drug resistance.
Main Methods:
- Literature review and synthesis of existing research on alternative splicing in cancer drug resistance.
- Classification of AS events into ACS, ATS, and ABS.
- Discussion of regulatory elements, trans-acting factors, and spliced variant functions.
Main Results:
- AS events are categorized into ACS, ATS, and ABS, each with distinct mechanisms and outcomes.
- Dysregulated spliced variants contribute to drug resistance and cancer cell survival.
- Aberrant AS can be a mechanism for cancer cell adaptation to environmental changes.
Conclusions:
- Targeting AS events, regulatory mechanisms, and specific spliced variants shows promise for overcoming cancer drug resistance.
- Understanding aberrant AS is crucial for developing novel therapeutic strategies against drug-resistant cancers.
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