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Modular Development of Enzyme-Activatable Proteolysis Targeting Chimeras for Selective Protein Degradation and Cancer
Yanchi Chen1,2, Lina Zhang1, Lincheng Fang1
1State Key Laboratory of Chemical Oncogenomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Shenzhen 518055, China.
Abstract:
As an emerging therapeutic modality, proteolysis targeting chimeras (PROTACs) indiscriminately degrade proteins in both healthy and diseased cells, posing a risk of on-target off-site toxicity in normal tissues. Herein, we present the modular development of enzyme-activatable PROTACs, which utilize enzyme-recognition moieties to block protein degradation activities and can be specifically activated by elevated enzymes in cancer cells to enable cell-selective protein degradation and cancer targeting. We identified the methylene alkoxy carbamate (MAC) unit as an optimal self-immolative linker, possessing high stability and release efficiency for conjugating enzyme-recognition moieties with PROTACs. Leveraging the MAC linker, we developed a series of enzyme-activatable PROTACs, harnessing distinct enzymes for cancer-cell-selective protein degradation. Significantly, we introduced the first dual-enzyme-activatable PROTAC that requires the presence of two cancer-associated enzymes for activation, demonstrating highly selective protein degradation in cancer cells over nonmalignant cells, potent in vivo antitumor efficacy, and no off-tumor toxicity to normal tissues. The broad applicability of enzyme-activatable PROTACs was further demonstrated by caging other PROTACs via the MAC linker to target different proteins and E3 ligases. Our work underscores the substantial potential of enzyme-activatable PROTACs in overcoming the off-site toxicity associated with conventional PROTACs and offers new opportunities for targeted cancer treatment.
Insights
Enzyme-activatable proteolysis targeting chimeras (PROTACs) selectively degrade proteins in cancer cells. This novel approach minimizes toxicity in healthy tissues, offering a safer cancer therapy.
Area of Science:
- Biochemistry
- Medicinal Chemistry
- Oncology
Background:
- Proteolysis targeting chimeras (PROTACs) offer therapeutic potential but face challenges with on-target, off-site toxicity in normal tissues due to indiscriminate protein degradation.
- Developing targeted PROTACs is crucial for enhancing therapeutic efficacy and patient safety.
Purpose of the Study:
- To engineer enzyme-activatable PROTACs for cancer-specific protein degradation, thereby mitigating toxicity in healthy cells.
- To develop a modular platform for creating cell-selective PROTACs using enzyme-responsive linkers.
Main Methods:
- Design and synthesis of enzyme-activatable PROTACs utilizing enzyme-recognition moieties and a methylene alkoxy carbamate (MAC) self-immolative linker.
- Evaluation of PROTACs for selective protein degradation in cancer cells versus nonmalignant cells.
- Assessment of *in vivo* antitumor efficacy and off-tumor toxicity.
Main Results:
- Identification of the MAC unit as a stable and efficient linker for enzyme-activatable PROTACs.
- Development of PROTACs activated by specific cancer-associated enzymes, including a dual-enzyme-activatable PROTAC.
- Demonstration of highly selective protein degradation in cancer cells, potent *in vivo* antitumor activity, and absence of off-tumor toxicity.
- Proof-of-concept for broad applicability by conjugating various PROTACs and E3 ligases.
Conclusions:
- Enzyme-activatable PROTACs represent a promising strategy to overcome the toxicity limitations of conventional PROTACs.
- This modular approach enables targeted cancer therapy with enhanced selectivity and safety.
- The developed platform opens new avenues for the design of next-generation targeted therapeutics.
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