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Inhibition of SARS-CoV-2 Replication by Self-Assembled siRNA Nanoparticles Targeting Multiple Highly Conserved Viral
Jianan Sun1,2, Siya Lu1,2, Jizhen Xiao1
1School of Public Health (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China.
Abstract:
Coronavirus infectious disease 2019 (COVID-19), caused by severe acute respiratory virus type 2 (SARS-CoV-2), has caused a global public health crisis. As an RNA virus, the high gene mutability of SARS-CoV-2 poses significant challenges to the development of broad-spectrum vaccines and antiviral therapeutics. There remains a lack of specific therapeutics directly targeting SARS-CoV-2. With the ability to efficiently inhibit the expression of target genes in a sequence-specific way, small interfering RNA (siRNA) therapy has exhibited significant potential in antiviral and other disease treatments. In this work, we presented a highly effective self-assembled siRNA nanoparticle targeting multiple highly conserved regions of SARS-CoV-2. The siRNA sequences targeting viral conserved regions were first screened and evaluated by their thermodynamic features, off-target effects, and secondary structure toxicities. RNA motifs including siRNA sequences were then designed and self-assembled into siRNA nanoparticles. These siRNA nanoparticles demonstrated remarkable uniformity and stability and efficiently entered cells directly through cellular endocytic pathways. Moreover, these nanoparticles effectively inhibited the replication of SARS-CoV-2, exhibiting a superior inhibitory effect compared to free siRNA. These results demonstrated that these self-assembled siRNA nanoparticles targeting highly conserved regions of SARS-CoV-2 represent highly effective antiviral candidates for the treatment of infections, and are promisingly effective against current and future viral variants.
Insights
Novel self-assembled small interfering RNA (siRNA) nanoparticles effectively target conserved regions of SARS-CoV-2. These nanoparticles show promise as potent antiviral candidates against current and future COVID-19 variants.
Area of Science:
- Biotechnology
- Virology
- Nanomedicine
Background:
- The global COVID-19 pandemic, caused by SARS-CoV-2, highlights the urgent need for effective antiviral therapies.
- The high mutation rate of SARS-CoV-2 complicates the development of broad-spectrum vaccines and treatments.
- Small interfering RNA (siRNA) therapy offers a promising approach for sequence-specific gene silencing in antiviral applications.
Purpose of the Study:
- To develop and evaluate a novel self-assembled siRNA nanoparticle system for targeting highly conserved regions of SARS-CoV-2.
- To assess the efficacy of these siRNA nanoparticles in inhibiting SARS-CoV-2 replication compared to free siRNA.
Main Methods:
- Screening and evaluation of siRNA sequences targeting conserved SARS-CoV-2 regions based on thermodynamic stability, off-target effects, and toxicity.
- Design and self-assembly of siRNA into uniform and stable nanoparticles.
- In vitro assessment of nanoparticle cellular uptake via endocytic pathways and inhibition of SARS-CoV-2 replication.
Main Results:
- The developed siRNA nanoparticles exhibited excellent uniformity and stability.
- Nanoparticles efficiently entered cells through cellular endocytic pathways.
- The siRNA nanoparticles demonstrated superior inhibition of SARS-CoV-2 replication compared to free siRNA.
Conclusions:
- Self-assembled siRNA nanoparticles targeting conserved SARS-CoV-2 regions are highly effective antiviral candidates.
- This approach shows significant potential for treating current and future SARS-CoV-2 variants.
- The findings support the advancement of siRNA nanoparticle technology for infectious disease treatment.
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