Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Collisions in Multiple Dimensions: Introduction01:05

Collisions in Multiple Dimensions: Introduction

4.9K
It is far more common for collisions to occur in two dimensions; that is, the initial velocity vectors are neither parallel nor antiparallel to each other. Let's see what complications arise from this. The first idea is that momentum is a vector. Like all vectors, it can be expressed as a sum of perpendicular components (usually, though not always, an x-component and a y-component, and a z-component if necessary). Thus, when the statement of conservation of momentum is written for a...
4.9K
Collisions in Multiple Dimensions: Problem Solving01:06

Collisions in Multiple Dimensions: Problem Solving

3.7K
In multiple dimensions, the conservation of momentum applies in each direction independently. Hence, to solve collisions in multiple dimensions, we should write down the momentum conservation in each direction separately. To help understand collisions in multiple dimensions, consider an example.
A small car of mass 1,200 kg traveling east at 60 km/h collides at an intersection with a truck of mass 3,000 kg traveling due north at 40 km/h. The two vehicles are locked together. What is the...
3.7K
Support Reactions in Three Dimensions01:27

Support Reactions in Three Dimensions

949
Support reactions in three dimensions help maintain the stability and equilibrium of various structures and systems. These reactions prevent the system from translating and rotating, ensuring the design can withstand external forces and perform its intended function efficiently and safely. Some of the supports providing support reactions in three dimensions are discussed below:
Ball and Socket Joint is one of the supports allowing free rotation about any axis. This freedom of rotation is...
949
Dimensionless Groups in Fluid Mechanics01:15

Dimensionless Groups in Fluid Mechanics

319
Dimensionless groups in fluid mechanics provide simplified ratios that help analyze fluid behavior without relying on specific units. The Reynolds number (Re), which represents the ratio of inertial to viscous forces, distinguishes between laminar and turbulent flows, making it essential in the design of pipelines and aerodynamic surfaces. The Froude number (Fr), the ratio of inertial to gravitational forces, is particularly useful in predicting wave formation and hydraulic jumps in...
319
Three-Dimensional Force System:Problem Solving01:30

Three-Dimensional Force System:Problem Solving

657
A three-dimensional force system refers to a scenario in which three forces act simultaneously in three different directions. This type of problem is commonly encountered in physics and engineering, where it is necessary to calculate the resultant force on the system, which can then be used to predict or analyze the behavior of the object or structure under consideration.
To solve a three-dimensional force system, first resolve each force into its respective scalar components. Do this using...
657
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

47
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
47

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Near-Infrared Phosphorescence Micelles with λ<sub>em</sub> > 800 nm Constructed by Block Copolymers and Platinum(II) Complexes: Integrating Bioimaging and Tumor Chemotherapy.

Langmuir : the ACS journal of surfaces and colloids·2026
Same author

Zwitterionic Powder-Based Gradient Adhesion-Lubrication Hydrogels for Efficient Hemostasis and Antiadhesion.

ACS applied materials & interfaces·2026
Same author

Integrated Hydrophilic Interdigitated Network for Silicone Rubber via a Gradient Polarity Modification Strategy.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)·2026
Same author

Fabrication of N, P, F Co-Doped MXene Nanosheets with Ionic Liquid-Assisted Carbonization as an Efficient Lubricant Additive.

Langmuir : the ACS journal of surfaces and colloids·2026
Same author

Polymer Brushes in Nanoelectronics: Nanotribology Insights from Fundamentals to Cutting-Edge Applications.

Nano letters·2026
Same author

Self-Assembled Iridescent Electrochromic Platform with Tunable Infrared Emissivity for Adaptive Visible-Infrared Dual-Band Camouflage in Dynamic Environments.

ACS applied materials & interfaces·2026
Same journal

DNA conformation determines the size of DNA-histone H1 nanoscale clusters.

The Journal of chemical physics·2026
Same journal

Confinement-controlled phase behavior of charged colloids under gravity.

The Journal of chemical physics·2026
Same journal

Dissociation line of tetrahydrofuran hydrates from NPH molecular dynamics simulations.

The Journal of chemical physics·2026
Same journal

Development of a magnetic interatomic potential for cubic antiferromagnets: The case of NiO.

The Journal of chemical physics·2026
Same journal

Simulations of solvent effects on excited state dynamics of p-DAPA, a red single benzene-based fluorophore.

The Journal of chemical physics·2026
Same journal

Rotational excitation of thioformaldehyde (H2CS) in collisions with molecular hydrogen.

The Journal of chemical physics·2026
See all related articles

Related Experiment Video

Updated: Jun 18, 2025

Author Spotlight: Streamlining Visual Dynamics to Simplify Molecular Dynamics Simulations Using Gromacs
05:00

Author Spotlight: Streamlining Visual Dynamics to Simplify Molecular Dynamics Simulations Using Gromacs

Published on: August 9, 2024

1.2K

Adaptive accelerated reactive molecular dynamics driven by parallel collective variables overcoming dimensionality

Rui Zhou1,2,3, Luyao Bao2,4, Weifeng Bu1,2,3

  • 1Key Laboratory of Nonferrous Metals Chemistry and Resources Utilization of Gansu Province, State Key Laboratory of Applied Organic Chemistry, and College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China.

The Journal of Chemical Physics
|August 1, 2024
PubMed
Summary
This summary is machine-generated.

Parallel Collective Variable-Driven Adaptive Accelerated Reaction Molecular Dynamics (PCVR) overcomes limitations in reactive molecular dynamics simulations. This new method enables faster, more accurate simulations of chemical reactions at lower temperatures and longer timescales.

More Related Videos

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

357
Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
06:37

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package

Published on: September 17, 2021

4.4K

Related Experiment Videos

Last Updated: Jun 18, 2025

Author Spotlight: Streamlining Visual Dynamics to Simplify Molecular Dynamics Simulations Using Gromacs
05:00

Author Spotlight: Streamlining Visual Dynamics to Simplify Molecular Dynamics Simulations Using Gromacs

Published on: August 9, 2024

1.2K
Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

357
Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
06:37

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package

Published on: September 17, 2021

4.4K

Area of Science:

  • Computational Chemistry
  • Materials Science
  • Chemical Engineering

Background:

  • ReaxFF reactive molecular dynamics is crucial for studying chemical reaction mechanisms.
  • Existing ReaxFF methods face limitations: high temperatures, short timescales, and dimensionality issues with collective variables.
  • These limitations restrict the scope and applicability of ReaxFF simulations for complex systems.

Purpose of the Study:

  • To introduce Parallel Collective Variable-Driven Adaptive Accelerated Reaction Molecular Dynamics (PCVR) to overcome ReaxFF limitations.
  • To enable simulations at lower temperatures, longer timescales, and larger system sizes.
  • To accurately model complex chemical reactions, such as ester oxidation, under industrially relevant conditions.

Main Methods:

  • Integrated metadynamics with ReaxFF to develop PCVR.
  • Employed customized Collective Variable (CV) parameterization based on bond distortion for parallel acceleration.
  • Confined sampling to fixed cutoff ranges for distinct bond distortions to manage CV dimensionality.

Main Results:

  • Successfully simulated the oxidation of ester-based oil with over 31,000 atoms at 500 K for 64 seconds.
  • Achieved 61% efficiency compared to original ReaxFF and was approximately 37 times faster than previous accelerated methods.
  • Accurately revealed the role of oxygen in ester oxidation at industrial temperatures, producing polymers consistent with experimental observations of sludge formation.

Conclusions:

  • PCVR significantly enhances the applicability of ReaxFF for non-strongly coupled systems with multiple reaction barriers.
  • The method overcomes system size limitations and enables simulations at lower temperatures and second-level timescales.
  • PCVR advances reactive molecular dynamics, offering a powerful tool for studying complex chemical processes under realistic conditions.