Related Experiment Video
Updated: Jun 17, 2025

Array Tomography Workflow for the Targeted Acquisition of Volume Information using Scanning Electron Microscopy
Published on: July 15, 2021
Array tomography: trails to discovery
Kristina D Micheva1, Jemima J Burden2, Martina Schifferer3,4
1Department of Neurosurgery, Stanford University, Stanford, CA, 94305, USA.
Array tomography (AT) enables detailed 3D biological structure analysis using serial sectioning and advanced microscopy. Novel developments simplify AT, making this powerful technique more accessible for researchers.
Area of Science:
- Biological imaging
- Microscopy techniques
- Structural biology
Background:
- Tissue slicing is crucial for studying biological structures.
- Volume electron microscopy (vEM) methods like array tomography (AT) offer advanced 3D analysis.
- AT combines serial ultramicrotomy, section imaging, and data re-assembly.
Purpose of the Study:
- To highlight advancements in array tomography (AT) for biological research.
- To address the underrepresentation of AT by detailing solutions and overcoming constraints.
- To guide researchers in selecting appropriate vEM techniques and exploring AT's potential.
Main Methods:
- Serial ultramicrotomy for ultrathin sectioning.
- Multi-modal imaging (light and scanning electron microscopy).
- Image re-assembly and analysis for 3D volume reconstruction.
Main Results:
- AT provides long-term sample preservation and multi-scale imaging compatibility.
- Serial sectioning enhances axial resolution and facilitates molecular labeling for correlative microscopy.
- New developments in sectioning and image analysis streamline the AT pipeline.
Conclusions:
- Array tomography offers significant advantages for multi-scale and multi-modal biological imaging.
- Overcoming perceived difficulties through new developments and training can increase AT adoption.
- AT has vast unexplored potential across diverse biological fields, aiding structural and molecular insights.
Related Concept Videos
Computed Tomography
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
Electron Microscope Tomography and Single-particle Reconstruction
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Imaging Studies I: CT and MRI
Description of the Procedures
Computed Tomography (CT) scan:
Computed Tomography (CT) scans use X-ray technology to generate detailed images of bones, organs, and tissues. During the scan, the patient lies on a moving table...
Positron Emission Tomography
One of the main requirements of a PET scan is a positron-emitting radioisotope, which is produced in a cyclotron and then attached to a substance used by the part of the body...
Brain Imaging
These technologies include computerized axial tomography (CAT or CT scans), positron-emission tomography (PET scans), magnetic resonance imaging (MRI), functional magnetic resonance imaging (fMRI), and Transcranial Magnetic...
X-ray Imaging

