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Applying masked autoencoder-based self-supervised learning for high-capability vision transformers of
Shinnosuke Sawano1, Satoshi Kodera1, Naoto Setoguchi2
1Department of Cardiovascular Medicine, The University of Tokyo Hospital, Tokyo, Japan.
Plos One
|August 14, 2024
Summary
Self-supervised learning with masked autoencoders (MAEs) significantly improved deep neural network performance for electrocardiography (ECG) analysis, even with limited data. This advance enhances the generalization of AI models in medical diagnostics.
Area of Science:
- Artificial Intelligence in Medicine
- Cardiology
- Machine Learning
Background:
- Generalizing deep neural network (DNN) algorithms to diverse populations is a key challenge in medical AI.
- Limited data availability often hinders the performance of DNN models for medical tasks like electrocardiography (ECG) analysis.
Purpose of the Study:
- To enhance the performance of 12-lead ECG analysis models using self-supervised learning with masked autoencoders (MAEs).
- To improve the detection of left ventricular systolic dysfunction (LVSD) using limited ECG data.
Main Methods:
- Pretrained Vision Transformer (ViT) models using MAE by reconstructing masked ECG data.
- Fine-tuned the MAE-based pre-trained model on ECG-echocardiography data for LVSD detection.
- Evaluated model performance using multi-center external validation data (n=229,439) and the AUROC metric.
Main Results:
- MAE-based ECG models demonstrated significantly higher performance than other DNN models across external validation cohorts (AUROC: 0.913-0.962 for LVSD, p < 0.001).
- Performance improvements were observed with increased model capacity and training data.
- The MAE-based model maintained high performance on the PTB-XL ECG benchmark dataset.
Conclusions:
- Self-supervised learning with MAEs effectively develops high-performance ECG analysis models, even with limited data.
- The proposed MAE-based approach enhances the generalization and accuracy of AI in cardiovascular diagnostics.

