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Related Concept Videos

Two-dimensional Gel Electrophoresis01:22

Two-dimensional Gel Electrophoresis

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An Optimized Protocol for Electrophoretic Mobility Shift Assay Using Infrared Fluorescent Dye-labeled Oligonucleotides
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pH modification of gel mobility shift improves polyplex selection In Vivo.

Q Leng1, A Anand1, A James Mixson1

  • 1Department of Pathology, University of Maryland School of Medicine, 10 S. Pine St., University of Maryland, Baltimore, MD, 21201, USA.

Biochemical and Biophysical Research Communications
|August 24, 2024
PubMed
Summary

Optimizing cationic polymer-plasmid ratios for gene delivery is crucial. Adjusting gel electrophoresis buffer pH to 7.3 significantly improved polyplex retardation, enhancing tumor targeting and reducing off-target effects.

Keywords:
HistidinePeptidePlasmidPolyplexTumors

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Methionine Functionalized Biocompatible Block Copolymers for Targeted Plasmid DNA Delivery
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Methionine Functionalized Biocompatible Block Copolymers for Targeted Plasmid DNA Delivery

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Area of Science:

  • Biomaterials Science
  • Gene Therapy
  • Polymer Chemistry

Background:

  • Cationic polymers form polyplexes with plasmids, protecting DNA and enhancing cellular uptake for gene delivery.
  • Gel retardation assays are vital for determining optimal polymer:plasmid ratios, but initial assays showed poor correlation with in vivo efficacy for histidine-lysine (HK) polyplexes.
  • The histidine component's pKa suggests pH-dependent binding, necessitating investigation into buffer conditions.

Purpose of the Study:

  • To re-evaluate polyplex retardation and stability using electrophoresis assays.
  • To investigate the effect of running buffer pH on the gel mobility shift of histidine-lysine (HK) polyplexes.
  • To correlate optimized polyplex formation with in vivo gene delivery efficacy and biodistribution.

Main Methods:

  • Formation of histidine-lysine (HK) polyplexes at varying peptide:plasmid DNA ratios (1:2 and 1:4 w:w).
  • Gel electrophoresis assays were performed using running buffers at standard pH 8.3 and altered pH 7.3.
  • In vivo tumor targeting and gene expression analysis were conducted for optimized polyplexes.

Main Results:

  • Both HK polyplexes showed significantly greater retardation at pH 7.3 compared to pH 8.3.
  • Complete gel retardation was achieved for the 1:2 HK polyplex at pH 7.3.
  • Polyplexes formed at the 1:2 ratio demonstrated improved tumor targeting, reduced gene expression variability, and lower lung and liver accumulation in vivo.

Conclusions:

  • Electrophoresis buffer pH is a critical parameter for accurately assessing polyplex retardation and optimizing polymer:plasmid ratios.
  • A running buffer pH of 7.3 enhances the predictive power of gel mobility shift assays for histidine-lysine polyplexes.
  • Optimized polyplex selection using pH 7.3 conditions improves gene delivery efficiency and safety for in vivo applications.