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Experimental RNAi02:15

Experimental RNAi

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RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
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RNA Interference01:23

RNA Interference

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RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
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Riboswitches01:56

Riboswitches

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Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
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siRNA - Small Interfering RNAs02:30

siRNA - Small Interfering RNAs

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Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
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Nucleic Acid Structure01:25

Nucleic Acid Structure

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The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
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RNA Structure01:19

RNA Structure

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The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
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Related Experiment Video

Updated: Jun 14, 2025

Studying Ribonucleotide Incorporation: Strand-specific Detection of Ribonucleotides in the Yeast Genome and Measuring Ribonucleotide-induced Mutagenesis
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Studying Ribonucleotide Incorporation: Strand-specific Detection of Ribonucleotides in the Yeast Genome and Measuring Ribonucleotide-induced Mutagenesis

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Nicotinamide Riboside: What It Takes to Incorporate It into RNA.

Felix Wenzek1, Alexander Biallas1, Sabine Müller1

  • 1Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany.

Molecules (Basel, Switzerland)
|August 29, 2024
PubMed
Summary
This summary is machine-generated.

Ancestral ribozymes may have used nicotinamide adenine dinucleotide (NAD) or nicotinamide riboside (NAR) as co-factors. This review explores overcoming chemical instability to covalently attach NAR to RNA for enhanced catalytic functions.

Keywords:
RNAco-factornicotinamide ribonucleotideredox reactionribozyme

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Area of Science:

  • Biochemistry
  • Astrobiology
  • Synthetic Biology

Background:

  • Nicotinamide adenine dinucleotide (NAD) is a crucial co-factor for protein enzymes in redox reactions.
  • The RNA world hypothesis suggests early life used RNA catalysts (ribozymes).
  • Engineered ribozymes have used nicotinamide moieties non-covalently, but covalent attachment of analogs like nicotinamide riboside (NAR) is challenging.

Purpose of the Study:

  • To review the chemical properties and synthesis of oxidized and reduced NAR.
  • To examine previous attempts at incorporating NAR into RNA structures.
  • To discuss strategies for overcoming NAR's chemical instability for RNA incorporation.

Main Methods:

  • Literature review of chemical properties of NAR and NARH.
  • Analysis of synthesis methods for NAR and NARH.
  • Review of studies on NAR incorporation into RNA.

Main Results:

  • NAR and its reduced form (NARH) exhibit chemical instability, complicating oligonucleotide synthesis.
  • Covalent attachment of NAR to RNA could offer advantages for ribozyme function.
  • Existing methods for NAR incorporation into RNA are limited by stability issues.

Conclusions:

  • Overcoming the chemical instability of NAR and NARH is key to successful covalent incorporation into RNA.
  • Developing stable NAR-containing RNA structures could expand the capabilities of engineered ribozymes.
  • This review provides insights into the challenges and potential solutions for utilizing NAR in RNA-based systems.