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Related Experiment Video

Updated: Jun 13, 2025

Activation and Measurement of NLRP3 Inflammasome Activity Using IL-1&#946; in Human Monocyte-derived Dendritic Cells
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Rotation and Self-Assembly Driving NLRP3 Activation.

Haochen Xu1, Zhonghuai Hou1,2, Rongbin Zhou3,4

  • 1Department of Chemical Physics, University of Science and Technology of China, Hefei, Anhui 230026, China.

Journal of Chemical Information and Modeling
|September 9, 2024
PubMed
Summary

NLRP3 inflammasome activation is a complex process involving protein assembly and conformational changes. This study reveals that NLRP3 activation is stabilized by subunit interactions within a disc assembly, differing from previous models.

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Area of Science:

  • Molecular Biology
  • Biochemistry
  • Computational Biology

Background:

  • NLRP3 is a crucial sensor protein detecting cellular stress.
  • NLRP3 activation involves domain rotation and assembly, but the precise mechanism is unclear.
  • Understanding NLRP3 dynamics and energetics is vital for inflammasome research.

Purpose of the Study:

  • To elucidate the molecular mechanism of NLRP3 assembly and activation.
  • To investigate the dynamics and energetics of NLRP3 conformational transitions.
  • To explore the role of NEK7 in NLRP3 cage dissociation.

Main Methods:

  • All-atom molecular dynamics (MD) simulations were performed.
  • Potential of Mean Force (PMF) calculations assessed activation energetics.
  • Binding free-energy calculations analyzed subunit interactions in disc assembly.

Main Results:

  • Monomeric NLRP3-NEK7 activation is energetically unfavorable (uphill process).
  • Protein self-assembly initiates at ~86.5°, making subsequent activation downhill.
  • Interactions between neighboring subunits stabilize the active NLRP3-NEK7 conformation in a disc assembly.

Conclusions:

  • NLRP3 activation is stabilized by inter-subunit interactions during disc assembly.
  • NEK7 facilitates the dissociation of inactive NLRP3 cages.
  • This study proposes a novel activation mechanism for NLRP3, distinct from prior models.