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Genotyping Single Nucleotide Polymorphisms in the Mitochondrial Genome by Pyrosequencing
Published on: February 10, 2023
Mitochondrial genomes of Macropsini (Hemiptera: Cicadellidae: Eurymelinae): Structural features, codon usage
Meishu Guo1, JiaJia Wang2, Hu Li3
1Guizhou Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Institute of Entomology Guizhou University Guiyang P. R. China.
This study analyzes the mitochondrial genomes of 26 leafhopper species in the Macropsini tribe. Findings clarify their evolutionary relationships and codon usage patterns, aiding in resolving taxonomic uncertainties.
Area of Science:
- Insect taxonomy
- Mitochondrial genomics
- Evolutionary biology
Background:
- The leafhopper tribe Macropsini (family Cicadellidae) is globally distributed, but its taxonomy and genus-level classification remain debated.
- Understanding the evolutionary history and mitogenome structure of Macropsini is crucial for resolving systematic issues.
Purpose of the Study:
- To investigate the patterns and evolutionary processes shaping Macropsini mitogenomes.
- To reconstruct phylogenetic relationships and address taxonomic controversies within five genera.
- To contribute valuable data to the subfamily Eurymelinae.
Main Methods:
- Sequencing and characterization of 26 Macropsini species' mitogenomes.
- Phylogenetic reconstruction using mitochondrial gene data.
- Analysis of nucleotide composition, codon usage, and evolutionary pressures.
Main Results:
- Significant A and T nucleotide skew and prevalence of T/A-ending codons observed in mitochondrial genes.
- Mutation and selective pressures identified as key factors influencing codon usage patterns.
- Phylogenetic analysis supported the monophyly of *Pedionis* and *Macropsis*, but revealed *Oncopsis* as paraphyletic concerning *Pediopsoides*.
Conclusions:
- The study provides novel data on Macropsini mitogenomes, enhancing understanding of their evolution.
- Results offer a foundation for future research on codon usage, adaptive evolution, and phylogeny within Eurymelinae.
- Taxonomic clarity is advanced, particularly regarding the relationships between *Oncopsis*, *Pediopsoides*, *Pedionis*, and *Macropsis*.
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