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Updated: Jun 10, 2025

Comparative Proteomic Analysis of Whole Kidney, Medulla, and Cortical Tubules in Diabetic Pathogenesis of Kidney Injury in Mice
Published on: May 2, 2025
Identification of crucial genes and possible molecular pathways associated with active vitamin D intervention in
MingXia Zhang1, Mi Tao2, Quan Cao2
1Department of Nephrology, Minda Hospital Affiliated to Hubei Minzu University, Hubei Clinical Research Center for Kidney Disease, Enshi, China.
Background:
A significant cause of advanced renal failure is diabetic nephropathy (DKD), with few treatment options available. Calcitriol shows potential in addressing fibrosis related to DKD, though its molecular mechanisms remain poorly understood. This research seeks to pinpoint the crucial genes and pathways influenced by calcitriol within the scope of DKD-related fibrosis.
Methods:
Single-cell gene expression profiling of calcitriol treated DKD rat kidney tissue and screening of fibrosis-associated cell subsets. Mendelian randomization and enrichment analyses (CIBERSORT, GSVA, GSEA, Motif Enrichment) were used to explore gene-immune cell interactions and signaling pathways. Key findings were validated using independent datasets and protein expression data from the Human Protein Atlas.
Results:
Calcitriol treatment reduced proliferative cell populations and highlighted the FoxO signaling pathway's role in DKD. SUMO3 and CD74 were identified as key markers linked to immune infiltration and renal function. These genes were significantly associated with creatinine levels and eGFR, indicating their potential role in DKD progression.
Conclusion:
Our results suggest that calcitriol modulates DKD fibrosis through the FoxO pathway, with SUMO3 and CD74 serving as potential biomarkers for kidney protection. These results provide fresh insights into strategies for treating DKD.
Insights
Calcitriol may treat diabetic kidney disease (DKD) fibrosis by modulating the FoxO pathway. SUMO3 and CD74 show potential as biomarkers for kidney protection in DKD patients.
Area of Science:
- Nephrology
- Endocrinology
- Molecular Biology
Background:
- Diabetic nephropathy (DKD) is a leading cause of advanced renal failure with limited therapeutic options.
- Calcitriol demonstrates potential for treating DKD-related fibrosis, but its underlying molecular mechanisms require elucidation.
- Understanding calcitriol's effects on DKD fibrosis is crucial for developing novel treatment strategies.
Purpose of the Study:
- To identify key genes and signaling pathways affected by calcitriol in the context of DKD-related fibrosis.
- To investigate the molecular mechanisms through which calcitriol exerts its antifibrotic effects in DKD.
- To explore potential biomarkers for monitoring DKD progression and calcitriol's therapeutic efficacy.
Main Methods:
- Single-cell gene expression profiling of calcitriol-treated DKD rat kidney tissue.
- Analysis of fibrosis-associated cell subsets and gene-immune cell interactions using Mendelian randomization and enrichment analyses (CIBERSORT, GSVA, GSEA, Motif Enrichment).
- Validation of key findings using independent datasets and human protein expression data.
Main Results:
- Calcitriol treatment led to a reduction in proliferative cell populations in DKD kidney tissue.
- The FoxO signaling pathway was identified as a key player modulated by calcitriol in DKD.
- SUMO3 and CD74 emerged as significant markers associated with immune infiltration, renal function (creatinine levels, eGFR), and DKD progression.
Conclusions:
- Calcitriol modulates DKD fibrosis via the FoxO signaling pathway.
- SUMO3 and CD74 represent potential biomarkers for kidney protection in DKD.
- This study offers novel insights into calcitriol-based therapeutic strategies for diabetic kidney disease.
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