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Related Experiment Video

Updated: Apr 24, 2026

A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
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Collaborative Large Language Models for Automated Data Extraction in Living Systematic Reviews.

Muhammad Ali Khan1, Umair Ayub1, Syed Arsalan Ahmed Naqvi1

  • 1Department of Medicine, Mayo Clinic, Phoenix, United States of America.

Medrxiv : the Preprint Server for Health Sciences
|October 14, 2024
PubMed
Summary
This summary is machine-generated.

Automated data extraction using large language models (LLMs) in a two-reviewer simulation shows promise for living systematic reviews (LSRs). Cross-critique of discordant LLM responses improved accuracy, supporting efficient evidence synthesis.

Keywords:
Data ExtractionLarge Language ModelsMeta-AnalysisNatural Language ProcessingSystematic Review

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Area of Science:

  • Medical Informatics
  • Artificial Intelligence in Healthcare
  • Systematic Review Methodology

Background:

  • Data extraction is a significant bottleneck in conducting living systematic reviews (LSRs).
  • Current methods are labor-intensive, hindering the timely synthesis of evidence.
  • There is a need for efficient, automated approaches to data extraction.

Purpose of the Study:

  • To develop and evaluate a generalizable, automated data extraction workflow using large language models (LLMs).
  • To simulate a two-reviewer process for data extraction to enhance accuracy and reliability.
  • To assess the performance of LLMs in extracting data for LSRs.

Main Methods:

  • A dataset from a published LSR, comprising 10 clinical trials and 22 publications, was utilized.
  • Two LLMs, GPT-4-turbo and Claude-3-Opus, were employed for data extraction.
  • A cross-critique mechanism was implemented for discordant LLM responses, followed by accuracy evaluation against a gold standard.

Main Results:

  • In the prompt development set, 96% of LLM responses were concordant with 0.99 accuracy.
  • In the held-out test set, 87% of responses were concordant with 0.94 accuracy.
  • Cross-critique resolved 51% of discordant responses, increasing their accuracy to 0.76.

Conclusions:

  • LLM-driven data extraction in a simulated two-reviewer workflow demonstrates reasonable performance for LSRs.
  • Concordant LLM responses are generally accurate, and cross-critique enhances accuracy for discordant ones.
  • This automated approach facilitates the creation of truly 'living' systematic reviews.