Related Experiment Video
Updated: Jun 10, 2025

Mapping the Binding Site of an Aptamer on ATP Using MicroScale Thermophoresis
Published on: January 7, 2017
Local potential energy density - A DFT analysis and the local binding energy in complexes with multiple interactions
1Federal University of Rio Grande do Norte (UFRN), Institute of Chemistry, Av. Senador Salgado Filho, 3000, Central Campus, Natal, CEP:59078-970, Brazil.
A new method, local potential energy density (LPED), indirectly determines supramolecular binding energy (SME). LPED uniquely quantifies individual interactions in complex systems, advancing computational chemistry.
Area of Science:
- Computational Chemistry
- Quantum Chemistry
- Molecular Interactions
Background:
- Accurate calculation of binding energies is crucial for understanding molecular interactions.
- Existing methods struggle to resolve individual interaction contributions in complex systems.
Purpose of the Study:
- Introduce and evaluate the local potential energy density (LPED) method.
- Demonstrate LPED's capability to indirectly determine supramolecular binding energy (SME).
- Showcase LPED's unique ability to quantify local interactions in multi-interaction complexes.
Main Methods:
- Calculated LPED using three density functional theory levels.
- Established linear correlations between LPED and SME.
- Applied LPED to analyze complexes like EDTA-Ca+2 and fosfomycin-Ca+2.
Main Results:
- LPED indirectly provides SME through a linear relationship.
- Linearity between LPED and SME is consistent across different theoretical levels.
- Successfully obtained local binding energies for multi-interaction complexes.
Conclusions:
- LPED offers a novel approach for determining binding energies.
- LPED enables the analysis of individual interactions in complex molecular systems.
- The method shows promise for advancing the study of supramolecular chemistry.
More Related Videos
Related Concept Videos
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
Crystal Field Theory - Tetrahedral and Square Planar Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
The Equilibrium Binding Constant and Binding Strength
Valence Bond Theory
Force and Potential Energy in One Dimension
Complexation Equilibria: The Chelate Effect

