EIF4A3-Induced Circular RNA CircDdb1 Promotes Muscle Atrophy through Encoding a Novel Protein CircDdb1-867aa

Xiaolan Zhu1,2, Tingting Yang1,2, Yongjun Zheng3

  • 1Cardiac Regeneration and Ageing Lab, Institute of Geriatrics (Shanghai University), Affiliated Nantong Hospital of Shanghai University (The Sixth People's Hospital of Nantong) and School of Life Sciences, Shanghai University, Nantong, 226011, China.

Insights

Circular RNAs (circRNAs) play a role in muscle atrophy. A specific circRNA, circDdb1, promotes muscle wasting by inhibiting protein translation and is a potential therapeutic target.

Area of Science:

  • Molecular Biology
  • Genetics
  • Physiology

Background:

  • Skeletal muscle atrophy is a debilitating condition with limited understanding of underlying molecular mechanisms.
  • Circular RNAs (circRNAs) are emerging as key regulators in various biological processes, but their role in muscle atrophy remains largely unexplored.

Purpose of the Study:

  • To investigate the involvement of circRNAs in skeletal muscle atrophy.
  • To identify specific circRNAs that regulate muscle atrophy and elucidate their mechanisms of action.

Main Methods:

  • Expression analysis of circRNAs in various muscle atrophy models (in vivo and in vitro).
  • Gain-of-function and loss-of-function studies of identified circRNAs.
  • Identification of protein-protein interactions and downstream signaling pathways.

Main Results:

  • A conserved circRNA, circDdb1, derived from the DDB1 gene, is significantly upregulated in multiple muscle atrophy conditions, including aging.
  • Ectopic expression of circDdb1 induces muscle atrophy, while its inhibition ameliorates atrophy caused by various stimuli (dexamethasone, TNF-α, Ang II, denervation, immobility).
  • circDdb1 encodes a novel protein (circDdb1-867aa) that enhances eEF2 phosphorylation, reducing protein translation and promoting atrophy.

Conclusions:

  • circDdb1 acts as a shared molecular regulator across diverse muscle atrophy pathologies.
  • circDdb1 represents a promising therapeutic target for combating skeletal muscle wasting.

Related Concept Videos

Formation of Muscle Fibers from Myoblasts01:13

Formation of Muscle Fibers from Myoblasts

De novo myogenesis, or the formation of muscle fibers, begins during the early embryonic stages. The skeletal muscle is formed from somites– blocks of embryonic cell layers. The somites are further divided into dermatomes, myotomes, sclerotomes, and syndetomes. Among these, the myotomes give rise to muscle fibers.
Muscle progenitor cells (MPCs) are formed from the myotomes. MPCs express genes that encode the transcription factors Pax3 and Pax7. Along with Pax 3/7, other transcription...
4.8K
RNA Editing02:23

RNA Editing

RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
8.9K
Nonsense-mediated mRNA Decay02:27

Nonsense-mediated mRNA Decay

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
10.6K
Regulation of the Unfolded Protein Response01:31

Regulation of the Unfolded Protein Response

Inositol-requiring kinase one or IRE1 is the most conserved eukaryotic unfolded protein response (UPR) receptor. It is a type I transmembrane protein kinase receptor with a distinctive site-specific RNase activity. As the binding mechanics of the misfolded proteins with the N-terminal domain of IRE-1 are unclear, three binding models — direct, indirect, and allosteric -- are proposed for receptor activation. Nevertheless, it is known that once a misfolded protein associates with IRE1, it...
2.4K
The Nucleolus02:55

The Nucleolus

The nucleolus is the most prominent substructure of the nucleus. When it was first discovered, it was considered to be an isolated organelle that forms fibrils and granules. In 1931, the relationship between the nucleolus and chromosomes was first described by Heitz. He observed that the appearance and size of nucleolus varies depending on the stage of the cell cycle. He also noticed constricted regions on different chromosomes clustered together at definite cell cycle stages. These regions,...
8.7K
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
13.1K