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Utilizing a Comprehensive Immunoprecipitation Enrichment System to Identify an Endogenous Post-translational Modification Profile for Target Proteins
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Light-induced targeting enables proteomics on endogenous condensates.

Choongman Lee1, Andrea Quintana1, Ida Suppanz2

  • 1Max Planck Institute for Immunobiology and Epigenetics, Freiburg 79108, Germany; Department of Biological Physics, Max Planck Institute for Immunobiology and Epigenetics, Freiburg 79108, Germany.

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Summary

Studying transient cellular condensates is challenging. A new method, light-induced targeting of endogenous condensates (LiTEC), uses optogenetics to target and study these structures in living cells.

Keywords:
IDRLiTECcompositionendogenous condensateintrinsically disorderedmass spectrometryoptogeneticsproteomicstargetingtranscriptional cluster

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Area of Science:

  • Cellular biology
  • Molecular biology
  • Biochemistry

Background:

  • Endogenous condensates are dynamic cellular structures crucial for biological processes.
  • Studying transient condensate components is difficult with traditional proteomics methods.

Purpose of the Study:

  • To develop a novel method for studying endogenous condensates in living cells.
  • To enable controlled and reversible targeting of molecules into condensates.

Main Methods:

  • Developed light-induced targeting of endogenous condensates (LiTEC) using optogenetics.
  • Identified molecular zip codes for condensate targeting.
  • Combined LiTEC with proximity-based biotinylation (BioID).

Main Results:

  • Demonstrated successful light-dependent targeting of cargo into condensates.
  • Uncovered putative components of transcriptional condensates in mouse embryonic stem cells.

Conclusions:

  • LiTEC provides a powerful tool for investigating endogenous condensate composition and function.
  • This approach facilitates genome-wide functional studies of cellular condensates.