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Updated: Jun 8, 2025

Identification of MyoD Interactome Using Tandem Affinity Purification Coupled to Mass Spectrometry
Published on: May 17, 2016
Ythdf2 facilitates precursor miR-378/miR-378-5p maturation to support myogenic differentiation
Kaiping Deng1,2, Yalong Su1,2, Zhipeng Liu1,2
1Sanya Institute of Nanjing Agricultural University, Nanjing Agricultural University, Nanjing, 210095, China.
Abstract:
Ythdf2 is known to mediate mRNA degradation in an m6A-dependent manner, and it has been shown to play a role in skeletal muscle differentiation. Recently, Ythdf2 was also found to bind to m6A-modified precursor miRNAs and regulate their maturation. However, it remains unknown whether this mechanism is related to the regulation of myogenesis by Ythdf2. Here, we observed that Ythdf2 knockdown significantly suppressed myotube formation and impacted miRNAs expression during myogenic differentiation. Through integrated analysis of miRNA and mRNA sequencing data, miR-378 and miR-378-5p were identified as important targets of Ythdf2 in myogenesis. Mechanically, Ythdf2 was found to interact with core components of the pre-miRNA processor complex, namely DICER1 and TARBP2, thereby facilitating the maturation of pre-miR-378/miR-378-5p in an m6A-dependent manner and resulting in an increase in the expression levels of mature miR-378 and miR-378-5p. Moreover, the downregulation of either miR-378 or miR-378-5p significantly inhibited myotube formation, while the forced expression of miR-378 or miR-378-5p could partially rescued Ythdf2 knockdown-induced suppression of myogenic differentiation by activating the mTOR pathway. Collectively, our results for the first time suggest that Ythdf2 regulates myogenic differentiation via mediating pre-miR-378/miR-378-5p maturation, which might provide new insights into the molecular mechanisms underlying m6A modification in the regulation of myogenesis.
Insights
Ythdf2 protein regulates muscle cell differentiation by controlling the maturation of specific microRNAs (miRNAs) through an m6A-dependent mechanism, impacting myogenesis.
Area of Science:
- Molecular Biology
- Epigenetics
- Cell Biology
Background:
- Ythdf2 protein mediates mRNA degradation and influences skeletal muscle differentiation.
- Ythdf2 interacts with m6A-modified precursor miRNAs, affecting their maturation.
- The role of Ythdf2 in myogenesis via miRNA maturation remains unclear.
Purpose of the Study:
- To investigate whether Ythdf2 regulates myogenesis by controlling miRNA maturation.
- To identify specific miRNAs targeted by Ythdf2 during myogenic differentiation.
- To elucidate the molecular mechanism linking Ythdf2, miRNA maturation, and myogenesis.
Main Methods:
- Ythdf2 knockdown experiments in myoblasts.
- miRNA and mRNA sequencing for integrated analysis.
- Co-immunoprecipitation assays to study protein interactions.
- Western blotting and qRT-PCR to assess protein and miRNA expression.
Main Results:
- Ythdf2 knockdown suppressed myotube formation and altered miRNA expression.
- miR-378 and miR-378-5p were identified as key Ythdf2 targets in myogenesis.
- Ythdf2 facilitates pre-miR-378/miR-378-5p maturation by interacting with DICER1 and TARBP2.
- Downregulation of miR-378/miR-378-5p inhibited myogenesis; their forced expression rescued Ythdf2 knockdown effects via the mTOR pathway.
Conclusions:
- Ythdf2 regulates myogenic differentiation by mediating pre-miR-378/miR-378-5p maturation in an m6A-dependent manner.
- This mechanism involves Ythdf2 interaction with the pre-miRNA processing complex.
- The findings provide novel insights into m6A modification's role in myogenesis regulation.
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