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Enhancing suicidal behavior detection in EHRs: A multi-label NLP framework with transformer models and semantic
Kimia Zandbiglari1, Shobhan Kumar1, Muhammad Bilal1
1Department of Pharmaceutical Outcomes & Policy, University of Florida, Gainesville, FL, USA.
Journal of Biomedical Informatics
|December 4, 2024
Summary
This study introduces a novel Natural Language Processing (NLP) framework for identifying suicidal behaviors in Electronic Health Records (EHRs). Advanced transformer models and a multi-label system improve the accuracy of detecting complex suicidal behaviors.
Area of Science:
- Computational linguistics
- Clinical informatics
- Public health
Background:
- Suicide is a significant global health concern, necessitating early identification of at-risk individuals.
- Existing Natural Language Processing (NLP) methods for suicide risk assessment in Electronic Health Records (EHRs) have limitations in capturing the full spectrum of suicidal behaviors.
Purpose of the Study:
- To develop a novel NLP approach for fine-grained, multi-label classification of suicidal behaviors in EHRs.
- To create a multi-class labeled dataset with comprehensive annotation guidelines to improve NLP accuracy and annotation efficiency.
Main Methods:
- A multi-class labeling system was developed, categorizing six types of suicidal behaviors with multi-label capability.
- An MPNet-based semantic retrieval framework was employed to extract relevant EHR sentences, followed by expert annotation.
- Transformer-based models were fine-tuned on the curated dataset for multi-label classification of suicidal behaviors.
Main Results:
- Lexical analysis identified key themes in suicide risk assessment, including personal history, mental health, and substance use.
- Fine-tuned models, particularly Bio_ClinicalBERT, BioBERT, and XLNet, achieved an F1 score of 0.81 in identifying suicidal behaviors.
- The multi-label classification system effectively captured the complexity of suicidal behaviors, outperforming traditional binary classification.
Conclusions:
- A robust NLP framework was established for detecting suicidal behaviors in EHRs using fine-tuned transformer models and a semi-automated pipeline.
- The study highlights the potential of advanced NLP in improving the identification of suicidal behaviors.
- Future research should focus on expanding and integrating these models to enhance patient care and clinical decision-making.
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