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Updated: Jun 5, 2025

Super-Resolution Live Cell Imaging of Subcellular Structures
Published on: January 13, 2021
Automated discovery of experimental designs in super-resolution microscopy with XLuminA
Carla Rodríguez1, Sören Arlt2, Leonhard Möckl3,4,5,6
1Max Planck Institute for the Science of Light, Erlangen, Germany. carla.rodriguez@mpl.mpg.de.
Abstract:
Driven by human ingenuity and creativity, the discovery of super-resolution techniques, which circumvent the classical diffraction limit of light, represent a leap in optical microscopy. However, the vast space encompassing all possible experimental configurations suggests that some powerful concepts and techniques might have not been discovered yet, and might never be with a human-driven direct design approach. Thus, AI-based exploration techniques could provide enormous benefit, by exploring this space in a fast, unbiased way. We introduce XLuminA, an open-source computational framework developed using JAX, a high-performance computing library in Python. XLuminA offers enhanced computational speed enabled by JAX's accelerated linear algebra compiler (XLA), just-in-time compilation, and its seamlessly integrated automatic vectorization, automatic differentiation capabilities and GPU compatibility. XLuminA demonstrates a speed-up of 4 orders of magnitude compared to well-established numerical optimization methods. We showcase XLuminA's potential by re-discovering three foundational experiments in advanced microscopy, and identifying an unseen experimental blueprint featuring sub-diffraction imaging capabilities. This work constitutes an important step in AI-driven scientific discovery of new concepts in optics and advanced microscopy.
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