Related Experiment Video
Updated: Jun 16, 2026

Thinned-skull Cortical Window Technique for In Vivo Optical Coherence Tomography Imaging
Published on: November 19, 2012
Fast and customizable image formation model for optical coherence tomography
Andrea Mazzolani1, Callum Macdonald1, Peter R T Munro1
1Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, Gower Street, London WC1E 6BT, UK.
Abstract:
Optical coherence tomography (OCT) is a technique that performs high-resolution, three-dimensional, imaging of semi-transparent scattering biological tissues. Models of OCT image formation are needed for applications such as aiding image interpretation and validating OCT signal processing techniques. Existing image formation models generally trade off between model realism and computation time. In particular, the most realistic models tend to be highly computationally demanding, which becomes a limiting factor when simulating C-scan generation. Here we present an OCT image formation model based on the first-order Born approximation that is significantly faster than existing models, whilst maintaining a high degree of realism. This model is made more powerful because it is amenable to simulation of phase sensitive OCT, thus making it applicable to scenarios where sample displacement is of interest, such as optical coherence elastography (OCE) or Doppler OCT. The low computational cost of the model also makes it suitable for creating large OCT data sets needed for training deep learning OCT signal processing models. We present details of our novel image formation model and demonstrate its accuracy and computational efficiency.
Related Concept Videos
Imaging Biological Samples with Optical Microscopy
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
Phase Contrast and Differential Interference Contrast Microscopy
In-phase-contrast microscopes, interference between light directly passing through a cell and light refracted by cellular components is used to create high-contrast, high-resolution images without staining. It is the oldest and simplest type of microscope that creates an image by altering the wavelengths of light rays passing through the specimen. Altered wavelength paths are created using an annular stop in the condenser. The annular stop produces a hollow cone of...
Confocal Fluorescence Microscopy
Electron Microscope Tomography and Single-particle Reconstruction
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Computed Tomography
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
Imaging Studies III: Computed Tomography

