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Updated: Jun 4, 2025

Conventional BODIPY Conjugates for Live-Cell Super-Resolution Microscopy and Single-Molecule Tracking
Published on: June 8, 2020
Competing Photocleavage on Boron and at the meso-Position in BODIPY Photocages
Ivan Ljubić1, Igor Sviben2, Vedran Brusar3
1Department of Physical Chemistry, Rud̵er Bošković Institute, Bijenička Cesta 54, Zagreb 10 000, Croatia.
Abstract:
BODIPY photocages (photocleavable protective groups) have stirred interest because they can release biologically active cargo upon visible light excitation. We conducted combined theoretical and experimental investigations on selected BODIPY photocages to elucidate the mechanism of the competing photocleavage at the boron and meso-position. Based on the computations, the former reaction involves elongation of the B-C bond, yielding a tight borenium cation and methyl anion. These ions are intercepted by CH3OH, enabling an efficient proton-coupled electron transfer (PCET) to produce the methane and isolated ether photoproducts. Singlet and triplet excited-state lifetimes were measured in CH3OH and CD3OD to probe the kinetic isotope effects (KIEs). The resulting KIEs are small, implying that the kinetic bottleneck is due to the C-B bond scission rather than the subsequent PCET. The introduction of a methoxy group in the meso-phenoxy substituent redirects the photosubstitution toward the meso-position. The corresponding regiochemistry was explained computationally. On elongating the C-O bonds in the S1 state, it is found that the unproductive conical intersection is encountered much earlier for the alkyl-O bond than for the phenyl-O bond. The current findings are valuable for the rational design of new BODIPY photocages with tailored biological applications.
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