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Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA
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The Use of eDNA Metabarcoding to Detect and Identify Phytophthora in Water Samples
Eva Randall1, Beatrix Keillor1, David E L Cooke2
1The James Hutton Institute, Dundee, UK.
Methods in Molecular Biology (Clifton, N.J.)
|December 27, 2024
Abstract:
We describe a protocol to amplify DNA barcodes of known and unknown taxa of Phytophthora and related plant pathogenic oomycetes from a range of environments. The methods focus on sampling pathogen propagules from water using in situ sampling and filtration equipment and buffers that enable efficient storage and DNA extraction for later downstream processing.
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