Related Experiment Video
Updated: May 7, 2025

08:57
Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
Published on: August 14, 2018
15.7K
Completing a molecular timetree of primates.
Jack M Craig1,2,3, S Blair Hedges1,2,3, Sudhir Kumar1,2,3
1Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States.
Frontiers in Bioinformatics
|December 31, 2024
Summary
This study presents a near-complete molecular timetree for 455 primate species, revealing consistent speciation rates across the primate tree of life. This resource aids in understanding primate biodiversity origins.
Area of Science:
- Evolutionary Biology
- Molecular Phylogenetics
- Primate Taxonomy
Background:
- Primates (apes, monkeys, tarsiers, lemurs) are well-studied, yet a complete molecular timetree is lacking.
- Existing phylogenies combine genomic data and literature consensus but miss species with available molecular data.
- A comprehensive molecular phylogeny is crucial for understanding primate evolutionary history and biodiversity patterns.
Purpose of the Study:
- To construct a near-complete molecular timetree for 455 primate species.
- To incorporate all available molecular data from GenBank for primate species.
- To test hypotheses regarding the origins of primate biodiversity and speciation rates.
Main Methods:
- Assembling a primate timetree using a synthetic approach.
- Conducting a literature review for published timetrees.
- Performing de novo dating of untimed trees and assembling timetrees from novel alignments.
- Integrating data from genomic phylogenies and TimeTree.org.
Main Results:
- A molecular timetree encompassing 455 primate species was successfully assembled.
- The study incorporated all available molecular data, addressing previous gaps.
- Analysis revealed largely constant speciation rates across the primate tree of life.
- Minor variations in speciation rates were observed in smaller primate clades.
Conclusions:
- The developed primate timetree provides a robust framework for macroevolutionary studies.
- Findings support a relatively constant rate of speciation across primate evolution.
- The study enhances our understanding of the drivers of primate biodiversity.
- This resource is valuable for future research on primate evolutionary history.
Related Concept Videos
Evolutionary Relationships through Genome Comparisons
5.6K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.6K
Phylogenetic Trees
44.7K
Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
44.7K
Phylogeny
43.3K
Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire kingdom.
43.3K
Synteny and Evolution
3.1K
John H. Renwick first coined the term “synteny” in 1971, which refers to the genes present on the same chromosomes, even if they are not genetically linked. The species with common ancestry tend to show conserved syntenic regions. Therefore, the concept of synteny is nowadays used to describe the evolutionary relationship between species.
Around 80 million years ago, the human and mice lineages diverged from the common ancestor. During the course of evolution, the ancestral...
Around 80 million years ago, the human and mice lineages diverged from the common ancestor. During the course of evolution, the ancestral...
3.1K
The Tree of Life - Bacteria, Archaea, Eukaryotes
31.6K
The “tree of life” describes the evolution of life and the evolutionary relationships between organisms. The root of the tree is the common ancestor to all life on Earth. All other species radiate from this point, much like the branches of a tree. The numerous tips of these branches on the tree of life represent every living, or extant, species. Extinct species, which are species that no longer exist, can be found towards the center of the tree. Currently, these organisms, both...
31.6K
Eukaryotic Evolution
29.3K
The endosymbiont theory is the most widely accepted theory of eukaryotic evolution; however, its progression is still somewhat debated. According to the nucleus-first hypothesis, the ancestral prokaryote first evolved a membrane to enclose DNA and form the nucleus. Conversely, the mitochondria-first hypothesis suggests that the nucleus was formed after endosymbiosis of mitochondria.
Contrary to the endosymbiont theory, the eukaryote-first hypothesis proposes that the simpler prokaryotic and...
Contrary to the endosymbiont theory, the eukaryote-first hypothesis proposes that the simpler prokaryotic and...
29.3K

