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modelRxiv: A Platform for the Dissemination and Interactive Display of Models.
Keith D Harris1, Guy Hadari1, Gili Greenbaum1
1Department of Ecology, Evolution and Behavior, The Hebrew University of Jerusalem, Jerusalem, Israel.
Ecology Letters
|December 31, 2024
Summary
A new platform, modelRxiv, enhances the sharing and analysis of complex ecological and evolutionary models. It uses large-language models (LLMs) to improve accessibility and reproducibility for researchers.
Area of Science:
- Ecology
- Evolutionary Biology
- Computational Biology
Background:
- Biological process modeling is crucial in ecology and evolutionary biology.
- Increasing model complexity hinders the dissemination and accessibility of research findings.
- Current methods for sharing and exploring model parameter spaces are often technically challenging.
Purpose of the Study:
- To develop an interactive platform, modelRxiv, for biological model dissemination and analysis.
- To overcome technical barriers associated with diverse modeling frameworks and environments.
- To improve the accessibility, reproducibility, and validation of ecological and evolutionary models.
Main Methods:
- Development of modelRxiv, an interactive repository for biological models.
- Utilization of large-language models (LLMs) to ensure platform language-agnosticism.
- Creation of a unified interface for model analysis, abstracting technical implementation details.
Main Results:
- modelRxiv provides a centralized, accessible platform for biological models.
- The LLM integration facilitates model onboarding and broadens user accessibility.
- The platform enables users to analyze models without requiring technical expertise in their implementation.
Conclusions:
- modelRxiv significantly enhances the sharing and utilization of complex biological models.
- The platform promotes greater reproducibility and validation in ecological and evolutionary research.
- modelRxiv democratizes access to sophisticated biological modeling tools for the scientific community.

