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Updated: May 7, 2025

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
C19orf12 gene variants causing mitochondrial membrane protein-associated neurodegeneration (MPAN)
Riyanka Kumari1,2, Vikram V Holla3, Neeharika Sriram3
1Institute of Bioinformatics, International Technology Park, Bangalore, 560066, India.
Mitochondrial membrane protein-associated neurodegeneration (MPAN) is a rare genetic disorder. This study details seven patients, expanding knowledge of C19orf12 gene variants and MPAN
Area of Science:
- Neurogenetics
- Neurodegenerative Diseases
- Molecular Genetics
Background:
- Mitochondrial membrane protein-associated neurodegeneration (MPAN) is a rare, inherited neurodegenerative disorder.
- MPAN is caused by variants in the C19orf12 gene, leading to spastic paraplegia, parkinsonism, and cognitive/behavioral symptoms.
- Understanding the clinical and genetic spectrum of MPAN is crucial for diagnosis and management.
Purpose of the Study:
- To present detailed clinical, radiological, and genetic findings of seven MPAN patients from six families.
- To characterize the phenotypic variability based on age of onset.
- To identify and analyze novel and known C19orf12 variants and their functional consequences.
Main Methods:
- Clinical and neurological examinations.
- Brain magnetic resonance imaging (MRI) for radiological assessment.
- Whole-exome sequencing for genetic variant identification.
- RT-PCR and Sanger sequencing for transcript analysis of splice-site variants.
Main Results:
- Seven patients exhibited diverse phenotypes: childhood-onset with spastic ataxia and optic atrophy; adult-onset with cognitive, behavioral, and parkinsonian symptoms.
- MRI revealed characteristic mineralization (pallidal splitting sign) and cerebellar atrophy in some patients.
- Exome sequencing identified six C19orf12 variants, including two novel splice-site and four known missense variants.
- Transcript analysis confirmed a splice defect and the use of an alternative cryptic splice site for the c.194-2delA variant.
Conclusions:
- The study expands the clinical and genetic spectrum of MPAN, correlating C19orf12 variants with distinct phenotypes.
- Genetic testing is vital for diagnosing MPAN and understanding the impact of C19orf12 variants.
- Functional analysis of splice-site variants provides insights into MPAN pathogenesis.
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