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Updated: Jun 3, 2025

An Approach to Study Shape-Dependent Transcriptomics at a Single Cell Level
Published on: November 2, 2020
The molecular and cellular landscape of hypertrophic cardiomyopathy phenotypes: transition from obstructive to
Jude Taylor1, Sean Lal2, Filip Braet3,4
1Centre for Healthy Futures, Torrens University Australia, Surry Hills, NSW, 2010, Australia.
Insights
Hypertrophic cardiomyopathy (HCM) shows distinct molecular and cellular differences between obstructive and end-stage disease. Obstructive HCM involves enhanced contractile function, while end-stage HCM features extensive tissue remodeling.
Area of Science:
- Cardiovascular Biology
- Genomics
- Translational Medicine
Background:
- Hypertrophic cardiomyopathy (HCM) is a myocardial disorder presenting as obstructive or end-stage disease.
- Understanding the molecular transition between HCM phenotypes is crucial for targeted therapies.
Purpose of the Study:
- To investigate transcriptomic and cell-specific expression profiles in obstructive and end-stage HCM.
- To identify molecular signatures and cellular contributions underlying HCM phenotypes.
Main Methods:
- Bioinformatics meta-analysis of independent gene expression datasets.
- Gene set enrichment analysis and cellular deconvolution.
- Identification of cell lineage genes and meta-genes.
Main Results:
- Obstructive HCM: enhanced muscle function, myocardial remodeling, impaired immunity; increased cardiomyocytes, decreased immune cells.
- End-stage HCM: enriched matrix remodeling, altered metabolism/signaling; increased fibroblasts, smooth muscle cells.
- Distinct molecular and cellular profiles characterize HCM phenotypes.
Conclusions:
- HCM phenotypes exhibit unique molecular and cellular landscapes.
- Obstructive HCM is linked to enhanced contractile profiles and cardiomyocyte expansion.
- End-stage HCM is characterized by extracellular matrix and vascular remodeling.
Abstract:
Hypertrophic cardiomyopathy (HCM) is a myocardial disorder which commonly presents as an obstructive or end-stage disease. This study aims to investigate the transcriptomic changes related to cardiac cell-specific expression profiles that underpin the molecular transition between the HCM phenotypes. This study utilizes bioinformatics meta-analysis to integrate independent datasets to generate a comprehensive gene expression profile of obstructive HCM and end-stage HCM phenotypes compared to donor hearts. Gene set enrichment and cellular deconvolution were applied to identify ontologies and pathways related to each phenotype and to enumerate cell abundances. The intersection between cell lineage genes and meta-genes was identified to explore the cellular contribution to the phenotypic molecular signatures. Meta-analysis revealed, enhanced muscle function and myocardial remodeling, alongside impaired immune and inflammatory processes in obstructive HCM. In contrast, enriched tissue matrix remodeling pathways and altered metabolic and signaling cascades were identified in end-stage HCM, indicating a shift towards cellular dysfunction and loss of homeostasis. These molecular profiles were associated with an altered cellular landscape, with increased cardiomyocytes and lower immune cell populations in obstructive samples but increased fibroblasts and smooth muscle cells in end-stage HCM, implicating extensive tissue remodeling. This study provides novel insights into the cellular contributions of contractile, immune, homeostatic, and vascular alterations underpinning each of the HCM phenotypes. KEY MESSAGES: HCM phenotypes are characterized by distinct molecular and cellular profiles. Obstructive HCM has an enriched contractile profile underpinned by an expanded cardiomyocyte population. End-stage HCM shifts the cellular profile towards extracellular and vascular remodeling.
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