Cryo-EM structure and complementary drug efflux activity of the Acinetobacter baumannii multidrug efflux pump AdeG
Zhenlin Ouyang1, Wenbo He1, Di Wu2
1Center for Microbiome Research of Med-X Institute, Department of Critical Care Medicine, Shaanxi Provincial Key Laboratory of Sepsis in Critical Care Medicine, The First Affiliated Hospital, Xi'an Jiaotong University, Xi'an 710061, China.
Abstract:
Multidrug-resistant Acinetobacter baumannii has emerged as one of the most antibiotic-resistant bacterial pathogens associated with nosocomial infection, with its resistance highly depending on multiple multidrug efflux pumps. Here, we report the cryoelectron microscopy (cryo-EM) structure of Acinetobacter drug efflux G (AdeG), the inner membrane component of one of three important resistance-nodulation-cell division (RND) pump family members in A. baumannii, which is involved in drug resistance to chloramphenicol, trimethoprim, ciprofloxacin, and clindamycin. We systematically compare the structures and substrate binding specificities of AdeG, AdeB, and AdeJ multidrug efflux pumps via molecular docking, revealing potential determinants for drug binding. Knockout experiments demonstrate a functional complementarity between AdeABC, AdeFGH, and AdeIJK. Our study provides a structural understanding of A. baumannii multidrug efflux pump AdeG and reveals complementary drug efflux activity between AdeG and other RND efflux pumps, which may promote further rational drug discovery efforts targeting multidrug efflux pumps.
Insights
This study reveals the structure of the Acinetobacter baumannii drug efflux pump AdeG, crucial for multidrug resistance. Complementary activities among efflux pumps highlight targets for new antibiotic development.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Multidrug-resistant Acinetobacter baumannii is a significant cause of hospital-acquired infections.
- Resistance in A. baumannii is often mediated by multiple multidrug efflux pumps.
- The resistance-nodulation-cell division (RND) pump family plays a critical role in A. baumannii's drug resistance.
Purpose of the Study:
- To determine the cryoelectron microscopy (cryo-EM) structure of the Acinetobacter drug efflux G (AdeG) pump.
- To compare the structures and substrate binding specificities of AdeG, AdeB, and AdeJ efflux pumps.
- To investigate the functional complementarity between different RND efflux pump systems in A. baumannii.
Main Methods:
- Cryoelectron microscopy (cryo-EM) for structural determination of AdeG.
- Molecular docking to compare substrate binding specificities of AdeG, AdeB, and AdeJ.
- Gene knockout experiments to assess functional complementarity of efflux pump systems.
Main Results:
- The cryo-EM structure of AdeG, an inner membrane component of an RND pump, was determined.
- Molecular docking revealed potential drug binding determinants for AdeG, AdeB, and AdeJ.
- Functional complementarity was observed between the AdeABC, AdeFGH, and AdeIJK efflux pump systems.
Conclusions:
- Structural understanding of AdeG provides insights into A. baumannii multidrug efflux.
- Complementary activities of RND efflux pumps suggest potential synergistic targeting strategies.
- Findings may guide rational drug discovery for combating multidrug-resistant A. baumannii.
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