SD-LayerNet: Robust and label-efficient retinal layer segmentation via anatomical priors
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Updated: Jun 2, 2025
Efficient and Consistent Generation of Retinal Pigment Epithelium/Choroid Flatmounts from Human Eyes for Histological Analysis
Published on: October 28, 2022
Botond Fazekas1, Guilherme Aresta1, Dmitrii Lachinov1
1Christian Doppler Laboratory for Artificial Intelligence in Retina, Department of Ophthalmology and Optometry, Medical University of Vienna, Vienna, Austria; Institute of Artificial Intelligence, Center for Medical Data Science, Medical University of Vienna, Vienna, Austria.
Background And Objectives:
Automated, anatomically coherent retinal layer segmentation in optical coherence tomography (OCT) is one of the most important components of retinal disease management. However, current methods rely on large amounts of labeled data, which can be difficult and expensive to obtain. In addition, these systems tend often propose anatomically impossible results, which undermines their clinical reliability.
Methods:
This study introduces a semi-supervised approach to retinal layer segmentation that leverages large amounts of unlabeled data and anatomical prior knowledge related to the structure of the retina. During training, we use a novel topological engine that converts inferred retinal layer boundaries into pixel-wise structured segmentations. These compose a set of anatomically valid disentangled representations which, together with predicted style factors, are used to reconstruct the input image. At training time, the retinal layer boundaries and pixel-wise predictions are both guided by reference annotations, where available, but more importantly by innovatively exploiting anatomical priors that improve the performance, robustness and coherence of the method even if only a small amount of labeled data is available.
Results:
Exhaustive experiments with respect to label efficiency, contribution of unsupervised data and robustness to different acquisition settings were conducted. The proposed method showed state of-the-art performance on all the studied public and internal datasets, specially in low annotated data regimes. Additionally, the model was able to make use of unlabeled data from a different domain with only a small performance drop in comparison to a fully-supervised setting.
Conclusion:
A novel, robust, label-efficient retinal layer segmentation method was proposed. The approach has shown state-of-the-art layer segmentation performance with a fraction of the training data available, while at the same time, its robustness against domain shift was also shown.
