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Proofreading and DNA Repair Assay Using Single Nucleotide Extension and MALDI-TOF Mass Spectrometry Analysis
Published on: June 19, 2018
Bypass of Methoxyamine-Adducted Abasic Sites by Eukaryotic Translesion DNA Polymerases
Anna V Yudkina1,2, Anna A Novikova3, Anastasia D Stolyarenko3
1Siberian Branch of the Russian Academy of Sciences Institute of Chemical Biology and Fundamental Medicine, 8 Lavrentieva Ave., 630090 Novosibirsk, Russia.
Abstract:
The apurinic/apyrimidinic site (AP site) is a highly mutagenic and cytotoxic DNA lesion. Normally, AP sites are removed from DNA by base excision repair (BER). Methoxyamine (MOX), a BER inhibitor currently under clinical trials as a tumor sensitizer, forms adducts with AP sites (AP-MOX) resistant to the key BER enzyme, AP endonuclease. As AP-MOX remains unrepaired, translesion DNA synthesis is expected to be the main mechanism of cellular response to this lesion. However, the mutagenic potential of AP-MOX is still unclear. Here, we compare the blocking and mutagenic properties of AP-MOX and the natural AP site for major eukaryotic DNA polymerases involved in translesion synthesis: DNA polymerases η, ι, ζ, Rev1, and primase-polymerase PrimPol. The miscoding properties of both abasic lesions remained mostly the same for each studied enzyme. In contrast, the blocking properties of AP-MOX compared to the AP site were DNA polymerase specific. Pol η and PrimPol bypassed both lesions with the same efficiency. The bypass of AP-MOX by Pol ι was 15-fold lower than that of the AP site. On the contrary, Rev1 bypassed AP-MOX 5-fold better than the AP site. Together, our data suggest that Rev1 is best suited to support synthesis across AP-MOX in human cells.
Insights
Methoxyamine (MOX) creates DNA adducts that block repair. DNA polymerase Rev1 efficiently bypasses these MOX-adducts, suggesting its role in cellular response to this lesion.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Apurinic/apyrimidinic (AP) sites are mutagenic DNA lesions repaired by base excision repair (BER).
- Methoxyamine (MOX) inhibits BER by forming AP-MOX adducts, which are resistant to AP endonuclease.
- Translesion DNA synthesis is the expected cellular response to unrepaired AP-MOX, but its mutagenicity is unknown.
Purpose of the Study:
- To compare the blocking and mutagenic properties of AP-MOX and natural AP sites.
- To investigate the roles of eukaryotic DNA polymerases (η, ι, ζ, Rev1, PrimPol) in translesion synthesis across these lesions.
Main Methods:
- In vitro assays measuring DNA polymerase bypass efficiency and miscoding.
- Comparison of lesion processing by multiple eukaryotic DNA polymerases.
Main Results:
- The miscoding potential of AP-MOX and AP sites was similar across enzymes.
- AP-MOX blocking efficiency was DNA polymerase-specific.
- Pol η and PrimPol showed similar bypass efficiency for both lesions.
- Pol ι bypass of AP-MOX was 15-fold lower than AP sites.
- Rev1 bypassed AP-MOX 5-fold more efficiently than AP sites.
Conclusions:
- Rev1 demonstrates superior bypass of AP-MOX compared to natural AP sites.
- Rev1 is likely the primary enzyme for translesion synthesis across AP-MOX in human cells.
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