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Updated: May 24, 2025

A Platform of Anti-biofilm Assays Suited to the Exploration of Natural Compound Libraries
Published on: December 27, 2016
Antibiofilm action of phytochemicals on Enterobacteriaceae
1Department of Biotechnology & Bioengineering, Institute of Advanced Research, Gandhinagar 382426, India.
Abstract:
The biofilm-associated infections pose a great threat to human health. The available drugs are not effective due to the formation of biofilm and limited access to underlying pathogens. The initiation of biofilm formation occurs through adhesion, facilitated by the adhesin protein MrkD1P in the fimbriae tip. This study targeted the MrkD1P protein and employed plant phenols to inhibit biofilm formation in Escherichia coli, Salmonella typhi, and Klebsiella pneumoniae, as major Enterobacteriaceae species. A homology model was constructed for the MrkD1P protein, and 44 phenolic derivatives were assessed for their interaction with this protein. Caffeic acid and 3-hydroxybenzoic acid exhibited the best binding-free energies of 29.61 kcal/mol and 24.24 kcal/mol, respectively. Using a microtiter plates-based minimum biofilm inhibitory concentration assay, it was found that doses of these compounds ranging from 2 to 256 mg/mL effectively reduced biofilm formation. The biofilm inhibition assay demonstrated over 80 % reduction of biofilms in all tested species at inhibitory doses. Further analysis through field emission gun scanning electron micrographs revealed that the compounds disintegrated fimbriae on cell surfaces. Additionally, the re-formation assay demonstrated the inability of biofilm-associated cells to re-form the biofilm on fresh surfaces due to fimbriae inhibition. This study highlights the antibiofilm capabilities of caffeic acid and 3-hydroxybenzoic acid, indicating their potential as effective treatments for illnesses caused by Enterobacteriaceae biofilms.
Insights
Plant phenols, caffeic acid and 3-hydroxybenzoic acid, effectively inhibit biofilm formation in common bacteria by targeting the MrkD1P adhesin protein, offering new treatment potential.
Area of Science:
- Microbiology
- Biochemistry
- Drug Discovery
Background:
- Biofilm-associated infections are a significant health concern, with limited treatment options due to pathogen protection within biofilms.
- The adhesin protein MrkD1P, located on fimbriae tips, is crucial for initiating bacterial adhesion and subsequent biofilm formation.
- Enterobacteriaceae species like E. coli, S. typhi, and K. pneumoniae are major causes of biofilm-related infections.
Purpose of the Study:
- To investigate the potential of plant phenols in inhibiting biofilm formation in key Enterobacteriaceae species.
- To identify specific phenolic compounds that can disrupt the MrkD1P adhesin protein's function.
- To evaluate the efficacy of these compounds in preventing and disintegrating established biofilms.
Main Methods:
- Construction of a homology model for the MrkD1P protein.
- In silico screening of 44 phenolic derivatives for binding affinity to MrkD1P.
- Minimum Biofilm Inhibitory Concentration (MBIC) assays to determine effective compound doses.
- Biofilm inhibition assays and field emission gun scanning electron microscopy (FEG-SEM) to assess biofilm reduction and fimbriae disruption.
- Biofilm re-formation assays to evaluate long-term inhibition.
Main Results:
- Caffeic acid and 3-hydroxybenzoic acid showed the highest binding-free energies with the MrkD1P protein.
- These compounds effectively reduced biofilm formation across tested Enterobacteriaceae species, with over 80% inhibition at specific concentrations.
- FEG-SEM confirmed that the phenolic compounds disintegrated bacterial fimbriae, thereby inhibiting adhesion.
- Inhibition of fimbriae prevented biofilm re-formation on new surfaces.
Conclusions:
- Caffeic acid and 3-hydroxybenzoic acid possess significant antibiofilm properties against Enterobacteriaceae.
- Targeting the MrkD1P adhesin protein with plant-derived phenols is a promising strategy for combating biofilm infections.
- These findings suggest potential therapeutic applications for these compounds in treating bacterial infections associated with Enterobacteriaceae biofilms.
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