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The openBIS Digital Platform for Instrumentation and Data Workflow in the Analytical Laboratory.
Yousuf Hemani1,2, Kilian Koch3, Oscar Mendo-Diaz4,2
1Swiss Federal Laboratories for Materials Science & Technology (Empa), Überlandstrasse 129, CH-8600 Dübendorf, Switzerland. yousuf.hemani@empa.ch.
Chimia
|March 3, 2025
Summary
Implementing openBIS, a FAIR-compliant data management platform, streamlines scientific data handling in analytical chemistry labs. This enhances data accessibility and laboratory efficiency through customized tools and data pipelines.
Area of Science:
- * Scientific data management
- * Analytical chemistry
- * Laboratory information systems
Background:
- * Effective scientific data management is crucial across research disciplines.
- * The FAIR principles (Findable, Accessible, Interoperable, Reusable) guide optimal data handling.
- * Researchers require customizable tools for FAIR-compliant data management.
Purpose of the Study:
- * To adapt the openBIS platform for an analytical chemistry laboratory at Empa.
- * To integrate laboratory data workflows for chemical analysis and spectroscopy.
- * To present solutions for challenges encountered during openBIS implementation.
Main Methods:
- * Selection and customization of openBIS as a FAIR-compliant Electronic Laboratory Notebook (ELN) and Laboratory Information Management System (LIMS).
- * Development of a data pipeline for chemical analysis and spectroscopy instruments.
- * Creation of a complex dashboard for data collection, visualization, and interaction.
Main Results:
- * Successful adaptation of openBIS to meet the specific needs of an analytical chemistry lab.
- * Demonstrated integration of laboratory data workflows within the openBIS platform.
- * Showcased a functional data pipeline and interactive dashboard for enhanced data management.
Conclusions:
- * openBIS can be effectively customized to support FAIR data principles in analytical chemistry.
- * The implemented solutions improved data management efficiency and accessibility for laboratory personnel.
- * The case studies highlight the successful integration of a digital data management platform in a research setting.

