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Optogenetic Functional MRI
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DREDge: robust motion correction for high-density extracellular recordings across species
Charlie Windolf1,2, Han Yu3,4, Angelique C Paulk5
1Department of Statistics, Columbia University, New York City, NY, USA. ciw2107@columbia.edu.
Nature Methods
|March 6, 2025
Summary
We developed DREDge, a new algorithm to accurately track brain motion during electrophysiology recordings. This method improves data analysis for systems neuroscience research across various species and recording types.
Area of Science:
- Systems Neuroscience
- Computational Neuroscience
- Neurotechnology
Background:
- High-density microelectrode arrays are crucial for systems neuroscience.
- Brain motion relative to these arrays complicates data analysis.
- Existing methods struggle with noisy and nonstationary electrophysiology data.
Purpose of the Study:
- To introduce DREDge (Decentralized Registration of Electrophysiology Data), a novel algorithm for robust motion registration.
- To enable automated, high-temporal-resolution motion tracking using local field potential data.
- To provide a foundation for scalable, automated registration of electrophysiological data.
Main Methods:
- Developed DREDge algorithm for decentralized registration of electrophysiology data.
- Utilized action potential and local field potential data for motion estimation.
- Validated DREDge on human intraoperative, nonhuman primate, and mouse (acute and chronic) recordings.
Main Results:
- DREDge reliably recovered evoked potentials and single-unit spike sorting in human recordings.
- Tracked motion across centimeters and multiple brain regions in nonhuman primates.
- Significantly improved motion correction in acute mouse recordings, particularly with ultrahigh-density probes.
- Achieved stable motion tracking in chronic mouse implants despite neural activity changes.
Conclusions:
- DREDge offers automated, scalable motion registration for electrophysiological data.
- The algorithm is effective across species, probe types, and drift conditions.
- Enables more robust downstream analyses of complex neural datasets.

