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Combining QD-FRET and Microfluidics to Monitor DNA Nanocomplex Self-Assembly in Real-Time
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Fluorescent Silver Nanoclusters Associated with Double-Stranded Poly(dGdC) DNA
Zakhar Reveguk1,2, Roberto Improta3, Lara Martínez-Fernández4
1Department of Materials Science and Engineering, The Iby and Aladar Fleischman Faculty of Engineering, University Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 6997801, Israel.
Nanomaterials (Basel, Switzerland)
|March 12, 2025
Summary
Silver ions binding to DNA create a unique fluorescent conjugate. This novel DNA-silver material shows potential for nanodevices and nanosensors due to its conductive properties.
Area of Science:
- Biophysics
- Materials Science
- Nanotechnology
Background:
- Double-stranded (ds) DNA, specifically poly(dGdC), has unique structural properties.
- Silver ions (Ag+) are known to interact with nucleic acids, but their effects on long, repetitive ds DNA are not fully understood.
Purpose of the Study:
- To investigate the structural and optical properties of poly(dGdC)-Ag+ conjugates.
- To explore the potential applications of these novel DNA-silver conjugates.
Main Methods:
- Atomic Force Microscopy (AFM) imaging
- Circular Dichroism (CD) spectroscopy
- Quantum Mechanical (QM) and Molecular Mechanics (MMs) calculations
Main Results:
- Binding of Ag+ to poly(dGdC) induces a one-base shift, forming alternating CC and GG base pairs coordinated by silver ions.
- The resulting DNA-silver conjugate exhibits strong fluorescence at 720 nm upon reduction and oxidation of silver.
- QM and MMs calculations support the proposed structure and dynamic behavior of the conjugate.
Conclusions:
- A novel, highly fluorescent DNA-silver conjugate with potential conductive properties has been synthesized.
- The poly(dGdC)-Ag conjugate functions as a dynamic system with embedded silver nanoclusters.
- These conjugates are promising candidates for applications in nanodevices and nanosensors.
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