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Updated: May 22, 2025

Generation of Human Chimeric Antigen Receptor Regulatory T Cells
Published on: January 3, 2025
RHOA Loss of Function Impairs the IFNγ Response and Promotes CD19 Antigen Escape to Drive CAR-T Resistance in Diffuse
Abstract:
CD19-directed chimeric antigen receptor (CAR)-T cells are breakthrough therapies for aggressive B-cell lymphomas, but less than half of patients achieve durable responses. We previously showed through whole-genome sequencing of tumors from CAR-T-treated patients that deletions of RHOA (3p21.31) are enriched in cases progressing after treatment. RHOA 's roles in resistance and pathogenesis are poorly defined, despite loss-of-function alterations that occur in ~20% of newly diagnosed diffuse large B-cell lymphoma (DLBCL) cases. To evaluate mechanisms of CAR-T resistance, we created RHOA-deficient DLBCL systems and confirmed cell-intrinsic loss of response to CAR-19 in vitro and in vivo. RHOA loss promotes AKT activation that impairs cell-intrinsic responses to interferon gamma (IFNγ). Moreover, expression of the CAR target CD19 is consistently down-regulated accompanied by a drive toward plasmablast differentiation. RHOA deficient tumors demonstrate greatly increased sensitivity to AKT-pathway inhibitors, which reverse impaired IFNγ responses. Lymphoma microenvironments in vivo in immunocompetent mice reveal that RHOA loss promotes decreased infiltration by cytotoxic T cells and enrichment of M2-polarized macrophages, known markers of CAR-T resistance in lymphoma clinical cases. Overall, we characterize RHOA deficiency as an AKT-mediated CAR-T resistance driver and implicate avoidance of T-cell mediated killing as a likely reason for RHOA's frequent loss in DLBCL pathogenesis.
Insights
Loss of RHOA in B-cell lymphomas drives resistance to chimeric antigen receptor (CAR)-T cell therapy by activating AKT and reducing T-cell killing. Restoring interferon gamma responses with AKT inhibitors may overcome this resistance.
Area of Science:
- Oncology
- Immunotherapy
- Molecular Biology
Background:
- Chimeric antigen receptor (CAR)-T cell therapy shows promise for aggressive B-cell lymphomas but durable responses are limited.
- Deletions in the RHOA gene are frequently observed in patients progressing after CAR-T therapy.
- RHOA's role in CAR-T resistance and lymphoma pathogenesis is not well understood.
Purpose of the Study:
- To investigate the mechanisms by which RHOA deficiency contributes to resistance against CD19-directed CAR-T cell therapy.
- To explore the impact of RHOA loss on cellular signaling pathways and immune cell interactions in the tumor microenvironment.
Main Methods:
- Generation of RHOA-deficient diffuse large B-cell lymphoma (DLBCL) cell systems for in vitro and in vivo studies.
- Assessment of CAR-T cell response, cellular signaling (AKT, interferon gamma), and CD19 expression.
- Analysis of tumor microenvironment composition, including T-cell infiltration and macrophage polarization, in immunocompetent mouse models.
Main Results:
- RHOA-deficient DLBCL cells exhibit intrinsic resistance to CAR-T cell therapy.
- RHOA loss leads to AKT activation, impaired interferon gamma responses, and down-regulation of CD19.
- RHOA-deficient tumors show increased sensitivity to AKT-pathway inhibitors, reversing interferon gamma response defects.
- In vivo, RHOA loss reduces cytotoxic T-cell infiltration and increases M2-polarized macrophages, indicating immune evasion.
Conclusions:
- RHOA deficiency is an AKT-mediated driver of CAR-T cell resistance in B-cell lymphomas.
- Loss of RHOA promotes immune evasion by reducing T-cell mediated killing, explaining its frequent occurrence in DLBCL.
- Targeting the AKT pathway offers a potential strategy to overcome RHOA-mediated CAR-T resistance.
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