A fine-tuned large language model based molecular dynamics agent for code generation to obtain material thermodynamic
Zhuofan Shi1,2,3, Chunxiao Xin1,2,3, Tong Huo2,3,4
1School of Software and Microelectronics, Peking University, Beijing, 102600, China.
This study introduces Molecular Dynamics Agent (MDAgent), an AI framework that automates materials science simulation code generation using large language models. MDAgent significantly reduces task time and improves code implementation for materials discovery.
Area of Science:
- Materials Science
- Computational Materials Science
- Artificial Intelligence in Science
Background:
- Materials science research increasingly uses AI-generated content (AIGC) for literature mining and data analysis.
- Automating theoretical calculations and code development in materials science remains a significant challenge.
- Existing methods require substantial manual effort for simulation program implementation.
Purpose of the Study:
- To propose a novel text-to-code generation approach for automating materials science simulation programs.
- To introduce the Molecular Dynamics Agent (MDAgent) framework for AI-driven code generation, execution, and refinement.
- To validate the effectiveness of automated code generation and review in thermodynamics simulations.
Main Methods:
- Utilizing large language models for text-to-code generation in materials science.
- Developing the Molecular Dynamics Agent (MDAgent) framework to guide AI models.
- Constructing a thermodynamic simulation code dataset for LAMMPS to fine-tune language models.
- Validating the approach with thermodynamics simulations using LAMMPS software.
Main Results:
- MDAgent framework successfully automates the generation, execution, and refinement of simulation code.
- Expert evaluation shows significant improvements in code generation and review capabilities.
- The proposed approach reduces average task time by 42.22% compared to traditional methods.
- A dedicated dataset for LAMMPS thermodynamic simulations was created for model fine-tuning.
Conclusions:
- AI-driven text-to-code generation offers a powerful solution for automating simulation program implementation in materials science.
- MDAgent framework enhances efficiency and accuracy in computational materials science tasks.
- This approach has significant potential to accelerate materials discovery and research.
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