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Updated: May 20, 2025

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CRISPR-Cas9-Mediated Precise Knock-In Edits in Zebrafish Hearts
Published on: September 13, 2022
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Lineage labeling with zebrafish hand2 Cre and CreERT2 recombinase CRISPR knock-ins
Zhitao Ming1, Fang Liu1, Hannah R Moran2
1Department of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa, USA.
Summary
New CRISPR-Cas9 technology enables the creation of zebrafish hand2 Cre and CreERT2 drivers for precise lineage tracing. These tools reveal hand2 progenitor contributions to various embryonic and larval tissues, including vasculature.
Area of Science:
- Developmental Biology
- Genetics
- Zebrafish Models
Background:
- CRISPR-Cas9 knock-in technology facilitates endogenous Cre recombinase driver generation.
- This enables lineage tracing and cell type-specific gene studies.
- Endogenous zebrafish hand2 Cre and CreERT2 drivers were generated using GeneWeld CRISPR-Cas9 precision targeted integration.
Purpose of the Study:
- To generate and characterize endogenous zebrafish hand2 Cre and CreERT2 drivers.
- To utilize these drivers for lineage tracing during embryogenesis and larval organogenesis.
- To investigate the contribution of hand2-expressing progenitors to various tissues.
Main Methods:
- CRISPR-Cas9 knock-in technology (GeneWeld) for generating endogenous drivers.
- Crossed hand2-2A-cre and hand2-2A-creERT2 knock-ins with loxP-based Switch reporters.
- Temporal induction of CreERT2 activity at specific embryonic and larval stages.
Main Results:
- Broad labeling of mesodermal and neural crest-derived lineages, including branchial arches, heart, liver, intestine, and enteric neurons.
- Novel hand2 lineage tracing patterns observed in venous blood vessels.
- Temporal analysis revealed hand2 progenitor contributions to venous and intestinal vasculature (24-48hpf) and restricted larval lineages.
Conclusions:
- hand2 progenitors from lateral plate mesoderm and ectoderm contribute to diverse embryonic lineages.
- hand2-expressing cells show restricted lineage contributions in later larval stages.
- The developed endogenous hand2 Cre and CreERT2 drivers are valuable tools for studying hand2 lineages in zebrafish development.

