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Published on: July 20, 2019
Neddylation as a target in PIK3CA-mutated head and neck cancer
Shorook Naara1, Zhibin Cui1, Adila Izgutdina1
1Department of Otolaryngology-Head and Neck Surgery, University of California San Francisco, San Francisco, CA, USA.
Abstract:
PIK3CA encodes the catalytic subunit of phosphoinositide 3-kinase (PI3K) enzyme and is the most commonly mutated oncogene in head and neck squamous cell carcinoma (HNSCC). This study aimed to identify potential therapeutic targets in HNSCC harboring mutant PIK3CA. We used CRISPR interference (CRISPRi)-based genome-wide screening methodology to reveal targetable genetic dependencies in PIK3CA-mutated HNSCC. Screening was conducted in an HPV-positive HNSCC cell line, UM-SCC-47, engineered to express the canonical E545K PIK3CA mutant. We identified 34 genes co-dependent on PIK3CA E545K mutation, including 5 genes in the neddylation pathway (NEDD8, NEDD8-MDP-1 and NAE1, USP8, UBA3). Validation experiments confirmed the essential role of NEDD8, NEDD8-MDP-1, and NAE1, indicating a novel regulatory mechanism in PIK3CA E545K-mutated HNSCC. Our findings suggest that PIK3CA mutation may serve as a predictive biomarker for neddylation inhibitor therapy in a subpopulation of HNSCC.
Insights
This study identified novel therapeutic targets in head and neck squamous cell carcinoma (HNSCC) with PIK3CA mutations. Neddylation pathway genes are essential in PIK3CA-mutated HNSCC, suggesting neddylation inhibitors as a potential therapy.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Phosphoinositide 3-kinase (PI3K) catalytic subunit alpha (PIK3CA) is frequently mutated in head and neck squamous cell carcinoma (HNSCC).
- Identifying therapeutic vulnerabilities in PIK3CA-mutated HNSCC is crucial for developing targeted treatments.
Purpose of the Study:
- To uncover genetic dependencies and potential therapeutic targets in PIK3CA-mutated HNSCC.
- To investigate the role of the neddylation pathway in PIK3CA-mutated HNSCC.
Main Methods:
- Utilized CRISPR interference (CRISPRi)-based genome-wide screening.
- Conducted screening in an HPV-positive HNSCC cell line (UM-SCC-47) with a PIK3CA E545K mutation.
- Performed validation experiments on identified key genes.
Main Results:
- Identified 34 genes co-dependent with PIK3CA E545K mutation.
- Discovered the essential role of 5 neddylation pathway genes, including NEDD8, NEDD8-MDP-1, and NAE1.
- Confirmed a novel regulatory mechanism involving neddylation in PIK3CA-mutated HNSCC.
Conclusions:
- PIK3CA mutation status may predict response to neddylation inhibitor therapy in HNSCC.
- The neddylation pathway represents a promising therapeutic target for a subset of HNSCC patients.
- Novel therapeutic strategies targeting the neddylation pathway can be explored for PIK3CA-mutated HNSCC.
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