Reversible Small Molecule Multivariant Ras Inhibitors Display Tunable Affinity for the Active and Inactive Forms of

Charles W Parry1, Francesca Pellicano1, Alexander W Schüttelkopf1

  • 1Cancer Research Horizons, CRUK Scotland Institute, Garscube Estate, Switchback Road, Glasgow G61 1BD, U.K.

PubMed

Insights

Researchers developed new reversible inhibitors targeting Ras proteins, offering potential treatments for various cancers beyond KRas G12C mutations. These inhibitors show promise in blocking cancer-driving pathways by targeting both active and inactive Ras states.

Area of Science:

  • Oncology
  • Molecular Biology
  • Drug Discovery

Background:

  • Activating Ras mutations are key cancer drivers, frequently linked to poor prognoses.
  • Current KRas G12C inhibitors address a specific mutation, leaving a significant unmet need for other Ras variants.
  • The efficacy of targeting non-G12C Ras mutants remains largely unexplored.

Purpose of the Study:

  • To discover novel reversible inhibitors targeting a broad spectrum of Ras mutations.
  • To investigate inhibitors binding to an enlarged switch I-II pocket in Ras proteins.
  • To evaluate the potential of these inhibitors in blocking Ras-driven signaling pathways.

Main Methods:

  • Design and synthesis of a novel series of reversible Ras inhibitors.
  • Biochemical assays to determine binding affinities and states (active/inactive) for inhibitors.
  • Cellular assays to assess inhibition of Ras-Raf interaction and downstream ERK phosphorylation.

Main Results:

  • Identified reversible inhibitors with nanomolar affinities for an enlarged Ras switch I-II pocket.
  • Developed chemotypes that selectively bind inactive Ras, active Ras, or both states.
  • Demonstrated that active-state binders inhibit wild-type Ras and multiple oncogenic KRas mutants, blocking Ras-Raf interaction and reducing ERK phosphorylation in cells.

Conclusions:

  • A novel class of reversible Ras inhibitors targeting an enlarged pocket has been discovered.
  • These inhibitors demonstrate broad activity against various Ras mutants, including non-G12C variants.
  • The findings present a promising new strategy for developing multivariant Ras inhibitors to treat diverse cancers.

Related Concept Videos

The Ras Gene02:38

The Ras Gene

The Ras-gene-encoded proteins are regulators of signaling pathways controlling cell proliferation, differentiation, or cell survival. The Ras-gene family in humans constitutes three primary members—the HRas, NRas, and KRas. These genes code for four functionally distinct yet closely related proteins—the HRas, NRas, KRas4A, and KRas4B. The involvement of mutant Ras genes in human cancer was first discovered in 1982 and is among the most common causes of human tumorigenesis.
Ras is a...
6.1K
Small GTPases - Ras and Rho01:24

Small GTPases - Ras and Rho

Ras and Rho are small monomeric GTPases that act downstream of receptor tyrosine kinase (RTK) and regulate various cellular processes. These GTPases switch between active and inactive states by binding to guanine nucleotides.
Three regulatory proteins control their activity:
3.8K
siRNA - Small Interfering RNAs02:30

siRNA - Small Interfering RNAs

Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
16.3K
Rab Proteins01:14

Rab Proteins

Rab proteins constitute the largest family of monomeric GTPases, of which 70 members are present in humans. Rab proteins and their effectors regulate consecutive stages of vesicle transport such as vesicle transport, docking, and fusion to the correct recipient membrane.
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...
3.8K
Experimental RNAi02:15

Experimental RNAi

RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
6.0K
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
5.9K