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HuBMAPR: an R client for the HuBMAP data portal.

Christine Hou1, Shila Ghazanfar2,3,4, Federico Marini5,6

  • 1Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, 21205, United States.

Bioinformatics Advances
|April 11, 2025
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Summary
This summary is machine-generated.

Researchers can now access human body cellular data more easily using HuBMAPR, an R client for the Human BioMolecular Atlas Program (HuBMAP) Data Portal. This tool streamlines data discovery and retrieval for biological research.

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Area of Science:

  • Biomedical research
  • Genomics
  • Cellular biology

Background:

  • The Human BioMolecular Atlas Program (HuBMAP) aims to create a comprehensive, accessible platform for studying the human body at the cellular level.
  • The HuBMAP Data Portal offers diverse datasets generated using advanced experimental technologies with spatial resolution.

Purpose of the Study:

  • To enhance accessibility of the HuBMAP Data Portal for researchers.
  • To introduce HuBMAPR, an R client designed for programmatic interaction with HuBMAP data.

Main Methods:

  • Development of an R client package named HuBMAPR.
  • Integration of HuBMAPR with the Bioconductor repository for easy installation and use.

Main Results:

  • HuBMAPR provides an efficient interface for discovering and retrieving HuBMAP data.
  • The R client simplifies programmatic access to complex, high-resolution spatial biological data.

Conclusions:

  • HuBMAPR significantly improves the usability and accessibility of the HuBMAP Data Portal for the research community.
  • The R package facilitates faster and more efficient analysis of human cellular data, advancing biomedical research.