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Updated: May 13, 2025

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Phenotype Correlations With Pathogenic DNA Variants in the MUTYH Gene: A Review of Over 2000 Cases
Monica Thet1,2,3, John-Paul Plazzer3, Gabriel Capella4,5
1Melbourne Medical School The University of Melbourne, Parkville, Victoria, Australia.
Abstract:
MUTYH-associated polyposis (MAP) is an autosomal recessive disorder where the inheritance of constitutional biallelic pathogenic MUTYH variants predisposes a person to the development of adenomas and colorectal cancer (CRC). It is also associated with extracolonic and extraintestinal manifestations that may overlap with the phenotype of familial adenomatous polyposis (FAP). Currently, there are discrepancies in the literature regarding whether certain phenotypes are truly associated with MAP. This narrative review is aimed at exploring the phenotypic spectrum of MAP to better characterize the MAP phenotype. Literature search was conducted to identify articles reporting on MAP-specific phenotypes. Clinical data from 2109 MAP patients identified from the literature showed that 1123 patients (53.2%) had CRC. Some patients with CRC had no associated adenomas, suggesting that adenomas are not an obligatory component of MAP. Carriers of the two missense founder variants, and possibly truncating variants, had an increased cancer risk when compared to those who carry other pathogenic variants. It has been suggested that somatic G:C > T:A transversions are a mutational signature of MAP and could be used as a biomarker in screening and identifying patients with atypical MAP, or in associating certain phenotypes with MAP. The extracolonic and extraintestinal manifestations that have been associated with MAP include duodenal adenomas, duodenal cancer, fundic gland polyps, gastric cancer, ovarian cancer, bladder cancer, and skin cancer. The association of breast cancer and endometrial cancer with MAP remains disputed. Desmoid tumors and congenital hypertrophy of the retinal pigment epithelium (CHRPEs) are rarely reported in MAP but have long been seen in FAP patients and thus could act as a distinguishing feature between the two. This collection of MAP phenotypes will assist in the assessment of pathogenic MUTYH variants using the American College of Medical Genetics and the Association for Molecular Pathology (ACMG/AMP) Variant Interpretation Guidelines and ultimately improve patient care.
Insights
MUTYH-associated polyposis (MAP) is an inherited condition causing colorectal cancer, with or without adenomas. Reviewing 2109 patients clarifies MAP
Area of Science:
- Genetics and Genomics
- Oncology
- Gastroenterology
Background:
- MUTYH-associated polyposis (MAP) is an autosomal recessive disorder linked to pathogenic MUTYH variants.
- MAP predisposes individuals to adenomas and colorectal cancer (CRC), with potential extracolonic manifestations.
- Discrepancies exist regarding the full phenotypic spectrum of MAP.
Purpose of the Study:
- To explore the phenotypic spectrum of MAP.
- To better characterize the MAP phenotype and its associated manifestations.
- To aid in the assessment of pathogenic MUTYH variants.
Main Methods:
- Narrative review of literature.
- Literature search for articles reporting MAP-specific phenotypes.
- Analysis of clinical data from 2109 MAP patients.
Main Results:
- Colorectal cancer (CRC) was present in 53.2% of MAP patients; adenomas are not obligatory.
- Specific MUTYH variants (founder missense, truncating) may increase cancer risk.
- Extracolonic manifestations include duodenal, gastric, ovarian, bladder, and skin cancers; breast and endometrial cancer associations are disputed.
Conclusions:
- The phenotypic spectrum of MAP is broader than previously recognized, including CRC without adenomas.
- Somatic G:C>T:A transversions may serve as a biomarker for MAP.
- Clarifying the MAP phenotype aids variant interpretation and patient care.
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